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SRX7266966: GSM4202669: Fgf20aHOM_1; Danio rerio; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 80.2M spots, 12G bases, 4.6Gb downloads

Submitted by: NCBI (GEO)
Study: A single cell transcriptome atlas of the developing zebrafish hindbrain [Fgf20a]
show Abstracthide Abstract
RNA-seq profile of Fgf20a homozygous mutant hindbrains compared with wilde-type hindbrains Method: 24hpf hindbrains were microdissected and the RNA was extracted. Qulity of dissection was monitored by qPCR and samples were selected for sequencing Overall design: 4 control wt (Cnt) and 3 Fgf20aHOM were deep sequenced
Sample: Fgf20aHOM_1
SAMN13477436 • SRS5761500 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Embryos were decorionated and deyolked in DMEM with high Glucose, no Glutamine, no Calcium (11530556, Gibco); hindbrains were micro-dissected using 0.33mm micro-fine sterile needles; RNA was isolated using Quick-RNA Microprep kit (Zymo Research) Samples were prepared with the Ovation® RNA-Seq System V2 (7102, NuGEN) for cDNA amplification, followed by NexteraXT (Illumina) for library preparation.
Experiment attributes:
GEO Accession: GSM4202669
Links:
Runs: 1 run, 80.2M spots, 12G bases, 4.6Gb
Run# of Spots# of BasesSizePublished
SRR1058653180,165,74612G4.6Gb2019-12-06

ID:
9541481

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