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SRX7622788: GSM4280513: MiniCoopR-MyrRSK melanoma, rep1; Danio rerio; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 35.2M spots, 3.6G bases, 2.3Gb downloads

Submitted by: NCBI (GEO)
Study: Oxidative phosphorylation promotes primary melanoma invasion
show Abstracthide Abstract
Dermal invasion is a hallmark of malignant melanoma. The molecular alterations driving the progression of primary melanoma to metastatic disease have been studied extensively, whereas the early progression of non-invasive primary melanoma to an invasive state is not well understood. To elucidate the mechanisms underlying the transition from radial to vertical growth, the first step in melanoma invasion, we developed a zebrafish melanoma model in which constitutive activation of ribosomal protein S6 kinase 1 (RSK1) drives tumor invasion. Transcriptomic analysis of RSK1-activated tumors identified metabolic changes, including upregulation of genes associated with oxidative phosphorylation. Vertical growth phase human melanoma cells show higher oxygen consumption and preferential utilization of glutamine compared to radial growth phase melanoma cells. Peroxisome proliferator-activated receptor gamma coactivator-1a (PGC1a has been proposed as a master regulator of tumor oxidative phosphorylation. In human primary melanoma specimens we show that PGC1a protein expression is positively associated with increased tumor thickness and expression of the proliferative marker Ki-67 and the reactive oxygen species (ROS) scavenger SCARA3. PGC1a depletion modulates cellular processes associated with primary melanoma growth and invasion, including oxidative stress. Our results support a role for PGC1a in mediating glutamine-driven OXPHOS to facilitate the invasive growth of primary melanoma. Overall design: Melanomas harvested from MiniCoopR-GFP zebrafish (n=6) and MiniCoopR-myrRSK (n=6) zebrafish
Sample: MiniCoopR-MyrRSK melanoma, rep1
SAMN13908304 • SRS6054742 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated using Rneasy plus mini kit (Qiagen) according to the manufacturer's protocol Library construction was performed using Illumina reagents according to the manufacturer's protocol
Experiment attributes:
GEO Accession: GSM4280513
Links:
Runs: 1 run, 35.2M spots, 3.6G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR1095657235,247,4613.6G2.3Gb2020-02-04

ID:
9950918

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