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SRX8684135: GSM4661423: Rat liver, Thiacloprid+Clothianidin_rep1; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 60.8M spots, 12.3G bases, 3.6Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic analysis of hepatotoxicity induced by pesticides imazalil, thiacloprid and clothianidin alone or in binary mixtures in a 28-day study in female Wistar rats
show Abstracthide Abstract
Co-occurrence of pesticide residues in food commodities raises a safety issue as their mixture effects on human health is largely unknown and need to be investigated. In a previous study, we reported the toxicological effects (pathology & histopathology) of imazalil (IMZ), thiacloprid (THI), and clothianidin (CTD) alone and in binary mixtures in a 28-day gavage study in female Wistar rats. Here, we undertook a transcriptomic analysis by means of total RNA sequencing (RNA-Seq). Ingenuity pathway analysis (IPA) was used to gain mechanistic information on the hepatotoxic pathways affected after treatment with pesticides, alone and in mixtures. Our data shows that 2986 genes were deregulated by CTD while IMZ and THI had effect on 194 and 225 genes, respectively. All three compounds share a common subset of genes whose network is associated with xenobiotic metabolism and nuclear receptors. Additionally, DNA repair process was predicted for CTD. The same networks were retrieved for the mixtures. Dose addition was indicated for the evaluated gene expressions. Our results bring new insight in the hepatotoxicity mechanisms of IMZ, THI, and CTD. Overall design: RNA sequencing of 31 liver samples, treatment of rats with three pesticides (imazalil, thiacloprid and clothianidin) and their binary mixtures
Sample: Rat liver, Thiacloprid+Clothianidin_rep1
SAMN15469650 • SRS6963091 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated from approximately 20-40 mg frozen rat tissue sample using the RNeasy Mini Kit (Qiagen, Hilden, Germany) following the manufacturer's protocol. RNA libraries were prepared for sequencing using TruSeq Stranded Total RNA Sample Preparation-Kit from Illumina
Experiment attributes:
GEO Accession: GSM4661423
Links:
Runs: 1 run, 60.8M spots, 12.3G bases, 3.6Gb
Run# of Spots# of BasesSizePublished
SRR1216931360,824,44612.3G3.6Gb2021-01-01

ID:
11299954

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