Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX314712: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050 by Pacific Biosciences SMRT
12 PACBIO_SMRT (PacBio RS) runs: 980,892 spots, 3G bases, 11.3Gb downloads

Design: SMRT deep shotgun sequencing of cultured isolate

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: Foodborne Pathogen Survey

PRJNA184141 • SRP026275 • All experiments • All runs

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Genome sequencing project

Sample:

SAMN01832088 • SRS452292 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050

Library:

Name: Salmonella enterica str. CFSAN002050_01 10kb SMRTbell library.

Instrument: PacBio RS

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Construction protocol: PacBio RS 10kb SMRTbell library protocol (DOI: 10.1093/nar/gkq543)

Spot descriptor:

1 forward

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	PacBio SMRT Analysis	1.4.0

Runs: 12 runs, 980,892 spots, 3G bases, 11.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR921436	81,741	160.3M	622Mb	2013-07-05
SRR926373	81,741	293.7M	1.1Gb	2013-07-05
SRR926374	81,741	444.3M	1.6Gb	2013-07-05
SRR926375	81,741	357.2M	1.3Gb	2013-07-05
SRR926376	81,741	332.3M	1.2Gb	2013-07-05
SRR926377	81,741	199.2M	768.7Mb	2013-07-05
SRR926378	81,741	242.3M	924.4Mb	2013-07-05
SRR926379	81,741	160M	626.7Mb	2013-07-05
SRR926380	81,741	217.9M	832.3Mb	2013-07-05
SRR926381	81,741	237.9M	900.4Mb	2013-07-05
SRR926382	81,741	202.4M	771Mb	2013-07-05
SRR926383	81,741	178M	685.8Mb	2013-07-05

ID:: 439502

SRA

Sequence Read Archive

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