Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq - SRA

SRX730359: Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 580,439 spots, 269.1M bases, 167.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention (EDLB-CDC)

Study: PulseNet Escherichia coli and Shigella genome sequencing

PRJNA218110 • SRP046387 • All experiments • All runs

show Abstracthide Abstract

PulseNet STEC genome reference library

Sample:

SAMN03098236 • SRS719579 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: Escherichia coli Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Escherichia coli.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17

Runs: 1 run, 580,439 spots, 269.1M bases, 167.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR1609706	580,439	269.1M	167.7Mb	2014-10-11

ID:: 1056271

Supplemental Content

Related information

BioProject
Links to BioProject
BioSample
BioSample links
PMC
Full text articles in PMC
PubMed
Links to PubMed articles
Taxonomy
Links to Taxonomy
WGS
Links to nucleotide WGS masters

Search details

Recent activity

Clear Turn Off Turn On

txid562[orgn] AND "strain 07-3009"[All Fields] (1)
SRA

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity