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ERX328679: Population Genomics of E. coli
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 629.3M bases, 395.7Mb downloads

Submitted by: IFH_MS
Study: Heteropathogenic virulence and phylogeny reveal phased pathogenic metamorphosis in Escherichia coli O2:H6
show Abstracthide Abstract
Extraintestinal pathogenic and intestinal pathogenic (diarrheagenic) Escherichia coli differ phylogenetically and by virulence profiles. Classic theory teaches simple linear descent in this species, where non-pathogens acquire virulence traits and emerge as pathogens. However, diarrheagenic Shiga toxin-producing E. coli (STEC) O2:H6 not only possess and express virulence factors associated with diarrheagenic and uropathogenic E. coli but also cause diarrhea and urinary tract infections. These organisms are phylogenetically positioned between members of an intestinal pathogenic group (STEC) and extraintestinal pathogenic E. coli. STEC O2:H6 is, therefore, a “heteropathogen,” and the first such hybrid virulent E. coli identified. The phylogeny of these E. coli and the repertoire of virulence traits they possess compel consideration of an alternate view of pathogen emergence, whereby one pathogroup of E. coli undergoes phased metamorphosis into another. By understanding the evolutionary mechanisms of bacterial pathogens, rational strategies for counteracting their detrimental effects on humans can be developed.
Sample: STEC O2:H6 from diarrhea
SAMEA2241288 • ERS359806 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
forward  reverse

Runs: 1 run, 1.3M spots, 629.3M bases, 395.7Mb
Run# of Spots# of BasesSizePublished
ERR3558961,296,362629.3M395.7Mb2014-03-06

ID:
668410

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