6YWX: The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site

PDB ID: 6YWXDownload
MMDB ID: 195439
PDB Deposition Date: 2020/4/30
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 6YWX: 83-meric; determined by author
Molecular Components in 6YWX
Label Count Molecule
Proteins (80 molecules)
1
60S Ribosomal Protein L2
Molecule annotation
1
60S Ribosomal Protein L3
Molecule annotation
1
60S Ribosomal Protein L4, Variant
Molecule annotation
1
50S Ribosomal Protein L5
Molecule annotation
1
60S Ribosomal Protein L6
Molecule annotation
1
Ribosomal_l9 Domain-containing Protein
Molecule annotation
1
Ul10m
Molecule annotation
1
60S Ribosomal Protein L19
Molecule annotation
1
Ribosomal Protein L13
Molecule annotation
1
50S Ribosomal Protein L14
Molecule annotation
1
50S Ribosomal Subunit Protein L15
Molecule annotation
1
60S Ribosomal Protein L16
Molecule annotation
1
50S Ribosomal Protein L17
Molecule annotation
1
Mitochondrial Ribosomal Protein
Molecule annotation
1
Aconitate Hydratase
Molecule annotation
1
Mitochondrial Large Ribosomal Subunit
Molecule annotation
1
Mitochondrial Ribosomal Protein Subunit L23
Molecule annotation
1
KOW Domain-containing Protein
Molecule annotation
1
Bl27m
Molecule annotation
1
50S Ribosomal Protein L24
Molecule annotation
1
54S Ribosomal Protein L4, Mitochondrial
Molecule annotation
1
50S Ribosomal Protein L30
Molecule annotation
1
Bl31m
Molecule annotation
1
Mitochondrial Ribosomal Protein Subunit L32
Molecule annotation
1
Bl33m
Molecule annotation
1
Related to Ribosomal Protein L34, Mitochondrial
Molecule annotation
1
Ribosomal Protein
Molecule annotation
1
Mitochondrial Large Ribosomal Subunit Yml35
Molecule annotation
1
Ml40
Molecule annotation
1
Ml41
Molecule annotation
1
Mitochondrial Ribosomal Protein L43
Molecule annotation
1
60S Ribosomal Protein L3
Molecule annotation
1
50S Ribosomal Subunit L30
Molecule annotation
1
Ml49
Molecule annotation
1
Ml50
Molecule annotation
1
Mitochondrial Ribosomal Protein L44
Molecule annotation
1
Ml54
Molecule annotation
1
Rnase III Domain-containing Protein
Molecule annotation
1
60S Ribosomal Protein L20
Molecule annotation
1
Mitochondrial 60S Ribosomal Protein L25
Molecule annotation
1
54S Ribosomal Protein L31, Mitochondrial
Molecule annotation
1
Ml67
Molecule annotation
1
Bs1m
Molecule annotation
1
Mito Ribosomal Protein S2
Molecule annotation
1
Ribosomal Protein S5, Mitochondrial
Molecule annotation
1
Mito Ribosomal Protein S4
Molecule annotation
1
37S Ribosomal Protein S5
Molecule annotation
1
Mito Ribosomal Protein S6
Molecule annotation
1
Ribosomal_s7 Domain-containing Protein
Molecule annotation
1
40S Ribosomal Protein S8
Molecule annotation
1
37S Ribosomal Protein S9, Mitochondrial
Molecule annotation
1
37S Ribosomal Protein S10, Mitochondrial
Molecule annotation
1
Mitochondrial Ribosomal Protein Subunit S18
Molecule annotation
1
Mitochondrial 30S Ribosomal Protein S12
Molecule annotation
1
40S Ribosomal Protein S13
Molecule annotation
1
Mitochondrial 40S Ribosomal Protein Mrp2
Molecule annotation
1
Ribosomal Protein S15
Molecule annotation
1
Ribosomal Protein S16, Mitochondrial
Molecule annotation
1
Mitochondrial 37S Ribosomal Protein S17
Molecule annotation
1
Mito Ribosomal Protein S18
Molecule annotation
1
Mitochondrial Ribosomal Protein S19
Molecule annotation
1
Mito Ribosomal Protein S21
Molecule annotation
1
37S Ribosomal Protein S25, Mitochondrial
Molecule annotation
1
Ms26
Molecule annotation
1
Ms27
Molecule annotation
1
Mitochondrial Ribosomal Protein Dap3
Molecule annotation
1
Ms33
Molecule annotation
1
37S Ribosomal Protein S24, Mitochondrial
Molecule annotation
1
37S Ribosomal Protein Mrp10, Mitochondrial
Molecule annotation
1
Duf1713 Domain-containing Protein
Molecule annotation
1
IGR Domain-containing Protein
Molecule annotation
2
FE Superoxide Dismutase
Molecule annotation
1
Ms45
Molecule annotation
1
Ms46
Molecule annotation
1
3-hydroxyisobutyryl-coa Hydrolase, Mitochondrial
Molecule annotation
2
IF1
Molecule annotation
1
60S Ribosomal Protein L1
Molecule annotation
1
L51_s25_ci-b8 Domain-containing Protein
Molecule annotation
Nucleotides(3 molecules)
1
23S rRNA
Molecule annotation
1
16S rRNA
Molecule annotation
1
tRNA E-site
Molecule annotation
Chemicals and Non-standard biopolymers (304 molecules)
249
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
1
SPERMINE (Link to PubChem not yet available)SPERMINE
50
POTASSIUM ION (Link to PubChem not yet available)POTASSIUM ION
1
NICOTINAMIDE-ADENINE-DINUCLEOTIDE (Link to PubChem not yet available)NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
ZINC ION (Link to PubChem not yet available)ZINC ION
1
ADENOSINE-5'-TRIPHOSPHATE (Link to PubChem not yet available)ADENOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.

Citing MMDB