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Status
Public on Feb 21, 2013
Title
NimbleGen Human Whole Genome CGH array [100718_HG18_WG_CGH_v3.1_HX12]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Roche NimbleGen
Manufacture protocol
see manufacturer's web site www.nimblegen.com
Description
Build: Hg18, NCBI 36
Submission date
Feb 21, 2013
Last update date
Feb 21, 2013
Organization
NimbleGen Systems, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov Phone
608-218-7600
URL
http://www.nimblegen.com/ Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (661)
GSM1185413 , GSM1185414 , GSM1185415 , GSM1185416 , GSM1185417 , GSM1185418
GSM1185419 ,
GSM1185420 ,
GSM1185421 ,
GSM1185422 ,
GSM1185423 ,
GSM1185424 ,
GSM1185425 ,
GSM1185426 ,
GSM1185427 ,
GSM1185428 ,
GSM1185429 ,
GSM1185430 ,
GSM1185431 ,
GSM1185432 ,
GSM1185433 ,
GSM1185434 ,
GSM1185435 ,
GSM1185436 ,
GSM1553893 ,
GSM1553894 ,
GSM1553895 ,
GSM1553896 ,
GSM1553897 ,
GSM1553898 ,
GSM1553899 ,
GSM1553900 ,
GSM1553901 ,
GSM1553902 ,
GSM1553903 ,
GSM1553904 ,
GSM1553905 ,
GSM1553906 ,
GSM1553907 ,
GSM1553908 ,
GSM1553909 ,
GSM1553910 ,
GSM1553911 ,
GSM1553912 ,
GSM1553913 ,
GSM1553914 ,
GSM1553915 ,
GSM1553916 ,
GSM1553917 ,
GSM1553918 ,
GSM1553919 ,
GSM1553920 ,
GSM1553921 ,
GSM1553922 ,
GSM1553923 ,
GSM1553924 ,
GSM1553925 ,
GSM1553926 ,
GSM1553927 ,
GSM1553928 ,
GSM1553929 ,
GSM1553930 ,
GSM1553931 ,
GSM1553932 ,
GSM1553933 ,
GSM1553934 ,
GSM1553935 ,
GSM1553936 ,
GSM1553937 ,
GSM1553938 ,
GSM1553939 ,
GSM1553940 ,
GSM1553941 ,
GSM1553942 ,
GSM1553943 ,
GSM1553944 ,
GSM1553945 ,
GSM1553946 ,
GSM1553947 ,
GSM1553948 ,
GSM1553949 ,
GSM1553950 ,
GSM1553951 ,
GSM1553952 ,
GSM1553953 ,
GSM1553954 ,
GSM1553955 ,
GSM1553956 ,
GSM1553957 ,
GSM1553958 ,
GSM1553959 ,
GSM1553960 ,
GSM1553961 ,
GSM1553962 ,
GSM1553963 ,
GSM1553964 ,
GSM1553965 ,
GSM1553966 ,
GSM1553967 ,
GSM1553968 ,
GSM1553969 ,
GSM1553970 ,
GSM1553971 ,
GSM1553972 ,
GSM1553973 ,
GSM1553974 ,
GSM1553975 ,
GSM1553976 ,
GSM1553977 ,
GSM1553978 ,
GSM1553979 ,
GSM1553980 ,
GSM1553981 ,
GSM1553982 ,
GSM1553983 ,
GSM1553984 ,
GSM1553985 ,
GSM1553986 ,
GSM1553987 ,
GSM1553988 ,
GSM1653663 ,
GSM1653664 ,
GSM1653665 ,
GSM1653666 ,
GSM1653667 ,
GSM1653668 ,
GSM1653669 ,
GSM1653670 ,
GSM1653671 ,
GSM1653672 ,
GSM1653673 ,
GSM1653674 ,
GSM1653675 ,
GSM1653676 ,
GSM1653677 ,
GSM1653678 ,
GSM1653679 ,
GSM1653680 ,
GSM1653681 ,
GSM1653682 ,
GSM1653683 ,
GSM1653684 ,
GSM1653685 ,
GSM1653686 ,
GSM1653687 ,
GSM1653688 ,
GSM1653689 ,
GSM1653690 ,
GSM1653691 ,
GSM1653692 ,
GSM1653693 ,
GSM1653694 ,
GSM1653695 ,
GSM1653696 ,
GSM1653697 ,
GSM1653698 ,
GSM1653699 ,
GSM1653700 ,
GSM1653701 ,
GSM1653702 ,
GSM1653703 ,
GSM1653704 ,
GSM1653705 ,
GSM1653706 ,
GSM1653707 ,
GSM1653708 ,
GSM1653709 ,
GSM1653710 ,
GSM1653711 ,
GSM1653712 ,
GSM1653713 ,
GSM1653714 ,
GSM1653715 ,
GSM1653716 ,
GSM1653717 ,
GSM1653718 ,
GSM1653719 ,
GSM1653720 ,
GSM1653721 ,
GSM1653722 ,
GSM1653723 ,
GSM1653724 ,
GSM1653725 ,
GSM1653726 ,
GSM1653727 ,
GSM1653728 ,
GSM1653729 ,
GSM1653730 ,
GSM1653731 ,
GSM1653732 ,
GSM1653733 ,
GSM1653734 ,
GSM1653735 ,
GSM1653736 ,
GSM1653737 ,
GSM1653738 ,
GSM1653739 ,
GSM1653740 ,
GSM1653741 ,
GSM1653742 ,
GSM1653743 ,
GSM1653744 ,
GSM1653745 ,
GSM1653746 ,
GSM1653747 ,
GSM1653748 ,
GSM1653749 ,
GSM1653750 ,
GSM1653751 ,
GSM1653752 ,
GSM1653753 ,
GSM1653754 ,
GSM1653755 ,
GSM1653756 ,
GSM1653757 ,
GSM1653758 ,
GSM1653759 ,
GSM1653760 ,
GSM1653761 ,
GSM1653762 ,
GSM1653763 ,
GSM1653764 ,
GSM1653765 ,
GSM1653766 ,
GSM1653767 ,
GSM1653768 ,
GSM1653769 ,
GSM1653770 ,
GSM1653771 ,
GSM1653772 ,
GSM1653773 ,
GSM1653774 ,
GSM1653775 ,
GSM1653776 ,
GSM1653777 ,
GSM1653778 ,
GSM1653779 ,
GSM1653780 ,
GSM1653781 ,
GSM1653782 ,
GSM1653783 ,
GSM1653784 ,
GSM1653785 ,
GSM1653786 ,
GSM1653787 ,
GSM1653788 ,
GSM1653789 ,
GSM1653790 ,
GSM1653791 ,
GSM1653792 ,
GSM1653793 ,
GSM1653794 ,
GSM1653795 ,
GSM1653796 ,
GSM1653797 ,
GSM1653798 ,
GSM1653799 ,
GSM1653800 ,
GSM1653801 ,
GSM1656481 ,
GSM1656482 ,
GSM1656483 ,
GSM1656484 ,
GSM1656485 ,
GSM1656486 ,
GSM1656487 ,
GSM1656488 ,
GSM1656489 ,
GSM1656490 ,
GSM1656491 ,
GSM1656492 ,
GSM1656493 ,
GSM1656494 ,
GSM1656495 ,
GSM1656496 ,
GSM1656497 ,
GSM1656498 ,
GSM1656499 ,
GSM1656500 ,
GSM1656501 ,
GSM1656502 ,
GSM1656503 ,
GSM1656504 ,
GSM1656505 ,
GSM1656506 ,
GSM1656507 ,
GSM1656508 ,
GSM1656509 ,
GSM1656510 ,
GSM1656511 ,
GSM1656512 ,
GSM1656513 ,
GSM1656514 ,
GSM1656515 ,
GSM1656516 ,
GSM1656517 ,
GSM1656518 ,
GSM1656519 ,
GSM1656520 ,
GSM1656521 ,
GSM1656522 ,
GSM1656523 ,
GSM1656524 ,
GSM1656525 ,
GSM1656526 ,
GSM1656527 ,
GSM1656528 ,
GSM1656529 ,
GSM1656530 ,
GSM1656531 ,
GSM1656532 ,
GSM1656533 ,
GSM1656534 ,
GSM1656535 ,
GSM1656536 ,
GSM1656537 ,
GSM1656538 ,
GSM1656539 ,
GSM1656540 ,
GSM1656541 ,
GSM1656542 ,
GSM1656543 ,
GSM1656544 ,
GSM1656545 ,
GSM1656546 ,
GSM1656547 ,
GSM1656548 ,
GSM1656549 ,
GSM1656550 ,
GSM1656551 ,
GSM1656552 ,
GSM1656553 ,
GSM1656554 ,
GSM1656555 ,
GSM1656556 ,
GSM1656557 ,
GSM1656558 ,
GSM1656559 ,
GSM1656560 ,
GSM1656561 ,
GSM1656562 ,
GSM1656563 ,
GSM1656564 ,
GSM1656565 ,
GSM1656566 ,
GSM1656567 ,
GSM1656568 ,
GSM1656569 ,
GSM1656570 ,
GSM1656571 ,
GSM1656572 ,
GSM1656573 ,
GSM1656574 ,
GSM1656575 ,
GSM1656576 ,
GSM1656577 ,
GSM1656578 ,
GSM1656579 ,
GSM1656580 ,
GSM1656581 ,
GSM1656582 ,
GSM1656583 ,
GSM1656584 ,
GSM1656585 ,
GSM1656586 ,
GSM1656587 ,
GSM1656588 ,
GSM1656589 ,
GSM1656590 ,
GSM1656591 ,
GSM1656592 ,
GSM1656593 ,
GSM1656594 ,
GSM1656595 ,
GSM1656596 ,
GSM1656597 ,
GSM1656598 ,
GSM1656599 ,
GSM1656600 ,
GSM1656601 ,
GSM1656602 ,
GSM1656603 ,
GSM1656604 ,
GSM1656605 ,
GSM1656606 ,
GSM1656607 ,
GSM1656608 ,
GSM1859729 ,
GSM1859730 ,
GSM1859731 ,
GSM1859732 ,
GSM1859733 ,
GSM1859734 ,
GSM1859735 ,
GSM1859736 ,
GSM1859737 ,
GSM1859738 ,
GSM1859739 ,
GSM1859740 ,
GSM1859741 ,
GSM1859742 ,
GSM1859743 ,
GSM1963193 ,
GSM1963194 ,
GSM1963195 ,
GSM1963196 ,
GSM1963197 ,
GSM1963198 ,
GSM1963199 ,
GSM1963200 ,
GSM1963201 ,
GSM1963202 ,
GSM1963203 ,
GSM1963204 ,
GSM1963205 ,
GSM1963206 ,
GSM1963207 ,
GSM1963208 ,
GSM1963209 ,
GSM1963210 ,
GSM1963211 ,
GSM1963212 ,
GSM1963213 ,
GSM1963214 ,
GSM1963215 ,
GSM1963216 ,
GSM1963217 ,
GSM1963218 ,
GSM1963219 ,
GSM1963220 ,
GSM1963221 ,
GSM1963222 ,
GSM1963224 ,
GSM1963225 ,
GSM1963226 ,
GSM1963227 ,
GSM1963228 ,
GSM1963229 ,
GSM1963230 ,
GSM1963231 ,
GSM1963232 ,
GSM1963233 ,
GSM1963234 ,
GSM1963235 ,
GSM1963236 ,
GSM1963237 ,
GSM1963238 ,
GSM1963239 ,
GSM1963240 ,
GSM1963241 ,
GSM1963242 ,
GSM1963243 ,
GSM1963244 ,
GSM1963245 ,
GSM1963246 ,
GSM1963247 ,
GSM1963248 ,
GSM1963249 ,
GSM1963250 ,
GSM1963251 ,
GSM1963252 ,
GSM1963253 ,
GSM1963254 ,
GSM1963255 ,
GSM1963256 ,
GSM1963257 ,
GSM1963258 ,
GSM1963259 ,
GSM1963260 ,
GSM1963261 ,
GSM1963262 ,
GSM1963263 ,
GSM1963264 ,
GSM1963265 ,
GSM1963266 ,
GSM1963267 ,
GSM1963268 ,
GSM1963269 ,
GSM1963270 ,
GSM1963271 ,
GSM1963272 ,
GSM1963273 ,
GSM1963274 ,
GSM1963275 ,
GSM1963276 ,
GSM1963277 ,
GSM1963278 ,
GSM1963279 ,
GSM1963280 ,
GSM1963281 ,
GSM1963282 ,
GSM1963283 ,
GSM1963284 ,
GSM1963285 ,
GSM1963286 ,
GSM1963287 ,
GSM1963288 ,
GSM1963289 ,
GSM1963290 ,
GSM1963291 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (6)
GSE48835 aCGH for bile duct cancer
GSE63623 Concurrent DNA copy number alterations and mutations in genes related to maintenance of genome stability in uninvolved glandular tissue from breast cancer patients
GSE67682 A genome-wide analysis of MDS and MDS/MPN patients
GSE67818 Sunitinib treatment exacerbates intratumoral heterogeneity in metastatic renal cancer (CGH)
GSE72296 Multi-scale genomic, transcriptomic and proteomic analysis of colorectal cancer cell lines to identify novel biomarkers
GSE75671 Genome-Wide DNA Copy Number Analysis of Acute Lymphoblastic Leukemia Identifies New Genetic Markers Associated with Clinical Outcome
Data table header descriptions ID PROBE_ID from .pos file
SEQ_ID CHROMOSOME RANGE_GB CHROMOSOME Accession.version
RANGE_START the start position relative to the RANGE_GB accession; POSITION
RANGE_END the end position relative to the RANGE_GB accession
SEQUENCE 60mer probe sequence
Data table ID SEQ_ID CHROMOSOME RANGE_GB RANGE_START RANGE_END SEQUENCE CHR01FS000037196
chr1:1-247249719
chr1
NC_000001.9 37196
37255
TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC
CHR01FS000052308
chr1:1-247249719
chr1
NC_000001.9 52308
52367
TAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTC
CHR01FS000357503
chr1:1-247249719
chr1
NC_000001.9 357503
357562
AGCCCAGTTGGCTGGACCAATGGATGGAGAGAATCACTCAGTGGTATCTGAGTTTTTGTT
CHR01FS000443361
chr1:1-247249719
chr1
NC_000001.9 443361
443420
ACACGTATATCGCTACGGTTACTAATTGTGTGCACCTAGCCCTGTAGCTGTGGTCATCTG
CHR01FS000530358
chr1:1-247249719
chr1
NC_000001.9 530358
530417
GCAAATTACAGCCACTAGGAAACGCTTTTCATTCATTCCGGGATGGCTGAAATGTAAGCA
CHR01FS000547649
chr1:1-247249719
chr1
NC_000001.9 547649
547708
CACTTCAGAGCTATGGGAACCAATGGAATTGGATCTAAGGTTTTGAGTTGGCTCTTGTGC
CHR01FS000560348
chr1:1-247249719
chr1
NC_000001.9 560348
560407
TAGCTACTCAGCTTGTTACAGATGAAGTAAACATTGTAATATTCACCCAGCTTTTGAGTG
CHR01FS000580411
chr1:1-247249719
chr1
NC_000001.9 580411
580470
AGATATAACAAGATGGGTGTGATATATCAAAAGCAGTGCTCAGAGTTGTAACACCTACAT
CHR01FS000614850
chr1:1-247249719
chr1
NC_000001.9 614850
614909
TAGCCATGACTAATGATCTTCCAGTGGGAAGGTACTAAGACTTTACAACATGTTTCTTGC
CHR01FS000722938
chr1:1-247249719
chr1
NC_000001.9 722938
722997
AGCCAAAGCAGAACCAAGCAGACTTTGTAGTTTTCATCAATTTTCTGGACGCTCCAGCCA
CHR01FS000750232
chr1:1-247249719
chr1
NC_000001.9 750232
750291
TCATGGTCAACAAAGATCTGACAGTGCATTGTCCCTAAACGATCCATACTTGCCTCACTG
CHR01FS000782679
chr1:1-247249719
chr1
NC_000001.9 782679
782738
TGAGGTTTCTAATCACAAGGAAGATGGAGAAAATGCAGAACAAGTGGTCAAGAACAGGGA
CHR01FS001018317
chr1:1-247249719
chr1
NC_000001.9 1018317
1018376
TCCTCTCTGATGTGAAATCCTTTCAGATGGAACGTGTTGAAGTCACAGACATGCTGCTCG
CHR01FS001069258
chr1:1-247249719
chr1
NC_000001.9 1069258
1069317
TGTGAATTCTGCTCCAATTAAAACACAAACTCTCTTGCAAAATGCACCTTGTCTCCGCCC
CHR01FS001099612
chr1:1-247249719
chr1
NC_000001.9 1099612
1099671
GGAGAACTCGCAGCAGGACACTAACATGTGGTCGCTTTTTGGATGATTTCTTCAGGTTTA
CHR01FS001314689
chr1:1-247249719
chr1
NC_000001.9 1314689
1314748
CACTATAACACCTTCATCAGATGACAAGCTACCTGGGCAGCAGGATAAACAAAAGCATTT
CHR01FS001315417
chr1:1-247249719
chr1
NC_000001.9 1315417
1315476
GAGTCACCAGTCTTTGCCTTTGTGGGGAGTGGATTCCTGCACTCTAACAGACTCACCCAG
CHR01FS001400200
chr1:1-247249719
chr1
NC_000001.9 1400200
1400259
ACTTCACTTAGAGATTGAAACTTCTCCCACTTCCAGAAGCTGAATCGTAGTGATCAGCCT
CHR01FS001457534
chr1:1-247249719
chr1
NC_000001.9 1457534
1457593
TGCTGGCCTCTTAGGATGAGTGAGGAAATGTTCTTCAATTTGTCCAAGAGTTTGAGGAGT
CHR01FS001489998
chr1:1-247249719
chr1
NC_000001.9 1489998
1490057
GGCAACCCGCTGGGATACAGTTCTTTGTCTTTCCTAAGAAGATCATTGTACATCTGGTCA
134937 17330 Kbytes .Supplementary file Size Download File type/resource GPL16707_100718_HG18_WG_CGH_v3.1_HX12.gff.gz
3.0 Mb
(ftp) (http) GFF
GPL16707_100718_HG18_WG_CGH_v3.1_HX12.ndf.gz
7.8 Mb
(ftp) (http) NDF
GPL16707_100718_HG18_WG_CGH_v3.1_HX12.pos.gz
1.1 Mb
(ftp) (http) POS
GPL16707_100718_HG18_WG_CGH_v3.1_HX12_HX12.ncd.gz
323 b
(ftp) (http) NCD
GPL16707_100718_HG18_WG_CGH_v3.1_HX12_probe_locations.gff.gz
1.1 Mb
(ftp) (http) GFF
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