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Series GSE80805 Query DataSets for GSE80805
Status Public on Aug 31, 2016
Title Microarray analysis of minor salivary glands from patients with primary Sjögren’s syndrome (SS) or non-SS
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Objective. A variety of chemokines contribute the pathogenesis of Sjögren’s syndrome (SS). However, the comprehensive analysis as for clinically potent ckemokines in SS has not been performed. In this study, focusing on CXC chemokines, we investigated the precise molecular mechanism and the clinical significance through chemokine and its receptor in the autoimmune lesions of primary SS. Methods. Gene expression profiles in the lip salivary glands (LSGs) from pSS patients and controls were analyzed using DNA microarray. Expression of chemokines and their receptor of biopsy samples of pSS pathients and controls were detected by immunofluorescence analysis. In addition, in vitro experiments using human salivary gland ductal and acinar cell lines were performed to analyze the expression of chemokines and signaling pathwaycytokines by qRT-PCR, ELISA, and Western blot analysis. Results. Gene expression profiles and immunohistochemical analysis revealed that IFN-γ-induced CXCL9 and CXCL10 were significantly increased in LSGs of pSS patients. In vitro experiments revealed that the protein expression of CXCL10 in ductal and acinar cells was differentially regulated by IFN-γ or TNF-α via NF-κB or JAK/STAT pathway. Moreover, CXCR3 expression was detected mainly in CD68+ macrophages, CD123+ plasmacytoid dendritic cells (pDCs), and in a few CD3+ T cells. Finally, Spearman's rank analysis revealed a negative correlation between the existence of CXCR3+ cells and pathological grading in LSG tissues of pSS patients (r: -0.019, p<0.01). Conclusion. These results suggest that CXCL10/CXCR3 axis plays in a key role in autoimmune response by interaction between immune cells and target cells in the pathogenesis of pSS.
 
Overall design Using Affymetrix GeneAtlas System, we determined the gene expression profiles of minor salivary glands from 2 primary SS and 2 non-SS patients.
 
Contributor(s) Nakashiro K, Aota K
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Submission date Apr 29, 2016
Last update date Mar 21, 2019
Contact name Koh-ichi Nakashiro
E-mail(s) nakako@m.ehime-u.ac.jp
Phone +81899605393
Organization name Ehime University Graduate School of Medicine
Department Oral and Maxillofacial Surgery
Street address 454 Shitsukawa
City Toon
State/province Ehime
ZIP/Postal code 791-0295
Country Japan
 
Platforms (1)
GPL13667 [HG-U219] Affymetrix Human Genome U219 Array
Samples (4)
GSM2137747 SS patient-1
GSM2137748 SS patient-2
GSM2137749 Non-SS patient-1
Relations
BioProject PRJNA320044

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80805_RAW.tar 8.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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