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Sample GSM786771 Query DataSets for GSM786771
Status Public on Apr 30, 2012
Title MM-12
Sample type RNA
 
Source name myometrium
Organism Homo sapiens
Characteristics tissue: myometrium
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description myometrium sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.65326598749322 122.1736 39.003049061665 0.798419 22
ILMN_2055271 7.83428870604231 183.2812 77.8328131822575 0.07246377 18
ILMN_1736007 7.68666387576043 132.3732 43.314005 0.6218709 25
ILMN_2383229 7.68119144481456 130.6939 32.7562001606413 0.6455863 10
ILMN_1806310 7.63509156064123 116.6026 35.7444979016184 0.8774704 13
ILMN_1779670 7.70794486993597 139.1697 62.2678744121557 0.4848485 20
ILMN_2321282 7.98927399629474 257.9617 115.778758553315 0.01844532 23
ILMN_1671474 7.66767558544873 126.5665 46.9468711188882 0.7220026 15
ILMN_1772582 7.64770024692424 120.5081 36.6272280944491 0.8274045 12
ILMN_1735698 7.73948331773793 149.2866 39.6784928615898 0.3175231 21
ILMN_1653355 7.85563832846847 191.9705 73.6949454806746 0.05270092 19
ILMN_1717783 7.79045380980404 166.416 74.7092236785894 0.1343874 23
ILMN_1705025 7.64834709278885 120.7234 39.23236 0.8260869 16
ILMN_1814316 7.75150514276696 153.2109 74.4863600052734 0.256917 12
ILMN_2359168 7.79147652157983 166.7919 70.6610450084203 0.1343874 20
ILMN_1731507 7.61866870239959 111.752 27.2532558203765 0.9249012 18
ILMN_1787689 7.85950131752899 193.6294 86.3107594644515 0.05270092 24
ILMN_1745607 11.7910578748798 7097.339 1326.04050325059 0 28
ILMN_2136495 7.62891921011109 114.6966 30.9791907751182 0.9011858 14
ILMN_1668111 7.61409948456709 110.3773 25.1986030010551 0.942029 19

Total number of rows: 48803

Table truncated, full table size 3147 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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