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Sample GSM786777 Query DataSets for GSM786777
Status Public on Apr 30, 2012
Title MM-8
Sample type RNA
 
Source name myometrium
Organism Homo sapiens
Characteristics tissue: myometrium
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description myometrium sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.68448094478134 109.4149 24.9035654132115 0.5704875 26
ILMN_2055271 7.86665540773459 145.9769 35.3037805525646 0.05533597 13
ILMN_1736007 7.62132901472062 98.18611 21.5649839294765 0.9090909 20
ILMN_2383229 7.64025188561499 101.5535 25.6271043240152 0.8208169 22
ILMN_1806310 7.73628388410864 119.1034 31.9878191272637 0.3096179 19
ILMN_1779670 7.7464648326742 121.0771 33.387755 0.2753623 25
ILMN_2321282 7.75844269638663 123.411 25.2902962831043 0.2252964 18
ILMN_1671474 7.67385326921509 107.4722 30.5849510912746 0.6231884 19
ILMN_1772582 7.77972332667118 127.5419 53.7811513769722 0.1646904 22
ILMN_1735698 7.64343710630377 102.1003 18.5419405130248 0.8050066 22
ILMN_1653355 7.77534313655674 126.6706 26.7161412148398 0.173913 15
ILMN_1717783 7.67117764668318 106.9824 21.8646975369087 0.6442688 20
ILMN_1705025 7.66259602969767 105.5341 23.5438420930423 0.7048748 22
ILMN_1814316 7.72825035411577 117.5738 44.4534185563394 0.345191 11
ILMN_2359168 7.68377403740645 109.2775 27.1677530343954 0.5704875 19
ILMN_1731507 7.53756420220978 83.56472 11.9536884696532 1 20
ILMN_1787689 7.79306429107418 130.2104 49.752322866876 0.1343874 27
ILMN_1745607 11.952922195781 4617.733 1082.60705660582 0 22
ILMN_2136495 7.63753213911151 101.0832 19.33062 0.8445323 16
ILMN_1668111 7.70588967896892 113.3743 39.856268 0.4690382 16

Total number of rows: 48803

Table truncated, full table size 3154 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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