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Sample GSM786779 Query DataSets for GSM786779
Status Public on Apr 30, 2012
Title MM-6
Sample type RNA
 
Source name myometrium
Organism Homo sapiens
Characteristics tissue: myometrium
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description myometrium sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.65179204946668 97.49807 19.6213821404218 0.7760211 23
ILMN_2055271 7.83739374609489 127.7504 40.02688 0.07905138 16
ILMN_1736007 7.66790976874013 99.97869 26.989551560739 0.6666667 21
ILMN_2383229 7.68866732577658 103.2586 18.2491609725733 0.5322793 12
ILMN_1806310 7.704647221561 105.7866 23.647628 0.4532279 16
ILMN_1779670 7.85309593236911 130.3963 40.4723311424682 0.05928854 24
ILMN_2321282 7.82396558071562 125.4324 36.6552932782283 0.09222662 23
ILMN_1671474 7.63341272123921 94.68726 23.1701631426647 0.8577075 17
ILMN_1772582 7.67942207837188 101.7846 27.3839103291512 0.5942029 27
ILMN_1735698 7.7736118526898 116.8424 30.0606025605943 0.1818182 22
ILMN_1653355 7.91271096676363 140.6719 29.6587356967555 0.03557312 17
ILMN_1717783 7.61210753746665 91.34041 23.9971613953978 0.9262187 22
ILMN_1705025 7.6964029830588 104.472 29.051974251369 0.4967062 32
ILMN_1814316 7.78945744947973 119.5406 45.4867844734888 0.140975 24
ILMN_2359168 7.83734750660703 127.7394 46.6425310540176 0.07905138 18
ILMN_1731507 7.65271312019273 97.63663 24.880296 0.7694334 16
ILMN_1787689 7.78398752970044 118.6343 27.4858095547875 0.1488801 17
ILMN_1745607 11.7285431004785 3385.451 865.57385279333 0 21
ILMN_2136495 7.69210819579858 103.8061 31.0009562429226 0.5177866 11
ILMN_1668111 7.6760461747854 101.2589 29.4325094461651 0.6152833 26

Total number of rows: 48803

Table truncated, full table size 3165 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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