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Sample GSM786780 Query DataSets for GSM786780
Status Public on Apr 30, 2012
Title LM-5
Sample type RNA
 
Source name leiomyoma
Organism Homo sapiens
Characteristics tissue: leiomyoma
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description leiomyoma sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.67173171476053 110.6139 34.3036998107927 0.6837944 21
ILMN_2055271 7.86130778235168 155.824 55.3612116154117 0.05401845 24
ILMN_1736007 7.81360928931223 143.5165 43.2394636356752 0.09486166 20
ILMN_2383229 7.64235113017937 104.5462 24.184836 0.8511199 16
ILMN_1806310 7.75501703569973 129.2617 50.9494901739536 0.2318841 18
ILMN_1779670 7.86311234998163 156.259 62.1735123435053 0.05270092 20
ILMN_2321282 7.85885945856624 155.1772 55.7710602630773 0.05665349 22
ILMN_1671474 7.71038973518262 119.0883 37.9244729558396 0.4374177 18
ILMN_1772582 7.64567408449587 105.2412 31.1905808693891 0.8392622 19
ILMN_1735698 7.69020820343075 114.6615 27.7765778854355 0.5494071 19
ILMN_1653355 7.86401951258424 156.4377 44.8286324546467 0.05270092 18
ILMN_1717783 7.63853425127629 103.7769 30.6413471060314 0.8603426 12
ILMN_1705025 7.7257575400656 122.5448 44.4004748634109 0.3517787 23
ILMN_1814316 7.71611226768771 120.3661 45.8203869609369 0.4097497 20
ILMN_2359168 7.66782369558927 109.7887 30.3559987351918 0.7088274 21
ILMN_1731507 7.63575465475772 103.2054 24.2254825660918 0.8695652 18
ILMN_1787689 7.88851057351382 163.2458 55.3444416617405 0.03557312 18
ILMN_1745607 11.7426395945529 5069.703 990.050144334074 0 22
ILMN_2136495 7.75904695450967 130.1585 54.7201370846309 0.2187088 18
ILMN_1668111 7.68382803637436 113.242 37.0338159811189 0.5876153 20

Total number of rows: 48803

Table truncated, full table size 3155 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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