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Sample GSM786788 Query DataSets for GSM786788
Status Public on Apr 30, 2012
Title LM-14
Sample type RNA
 
Source name leiomyoma
Organism Homo sapiens
Characteristics tissue: leiomyoma
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description leiomyoma sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.7415631269788 91.04846 26.5546399293246 0.2911726 20
ILMN_2055271 7.81810137264686 99.17593 14.935995 0.1014493 9
ILMN_1736007 7.72522566539126 89.353 17.9829730374581 0.3557312 24
ILMN_2383229 7.70004111864285 86.7554 24.7995283671782 0.4822134 19
ILMN_1806310 7.68394244055878 85.09445 15.4977600708328 0.5862978 19
ILMN_1779670 7.72913445316976 89.74721 17.6999851517277 0.3438735 20
ILMN_2321282 7.75946881485491 92.89059 14.5125124988622 0.2226614 18
ILMN_1671474 7.6066801874412 77.11087 14.5234947602763 0.9525692 23
ILMN_1772582 7.66945230396942 83.63311 17.2458681057369 0.6666667 26
ILMN_1735698 7.71845727976524 88.67178 18.524349462449 0.3754941 24
ILMN_1653355 7.85293740653437 102.9272 24.2420373500529 0.06324111 18
ILMN_1717783 7.6047313391469 76.9211 11.985513199392 0.9552042 22
ILMN_1705025 7.67856108898462 84.575 13.2045520625715 0.6179183 10
ILMN_1814316 7.72265223066892 89.07482 27.8151854449597 0.3623188 15
ILMN_2359168 7.70836682073103 87.58184 18.8068624336654 0.4334651 15
ILMN_1731507 7.63132271683986 79.66227 8.97953681961002 0.8787879 12
ILMN_1787689 7.86364020948081 104.0338 19.7768988400917 0.05797102 22
ILMN_1745607 11.614718707793 2026.971 506.343901688309 0 14
ILMN_2136495 7.62366692346584 78.84583 13.11454 0.9051383 16
ILMN_1668111 7.62438907959423 78.91656 10.8613412562287 0.9011858 24

Total number of rows: 48803

Table truncated, full table size 3164 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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