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Sample GSM786789 Query DataSets for GSM786789
Status Public on Apr 30, 2012
Title MM-14
Sample type RNA
 
Source name myometrium
Organism Homo sapiens
Characteristics tissue: myometrium
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description myometrium sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.66304482594747 83.09916 14.4875157311728 0.7233202 20
ILMN_2055271 7.73531795113816 90.86093 18.8103584266023 0.3030303 32
ILMN_1736007 7.82091825205615 100.1589 29.4315915764084 0.08959157 28
ILMN_2383229 7.66647029295272 83.45993 15.9316176883585 0.7035573 21
ILMN_1806310 7.6233458029682 78.77549 16.0234192375566 0.9117259 17
ILMN_1779670 7.88805328398855 107.973 24.8661645820133 0.04084321 31
ILMN_2321282 7.68069343545378 84.99775 16.744292 0.6113307 16
ILMN_1671474 7.60104014792692 76.16534 13.7343167039575 0.9644269 23
ILMN_1772582 7.72070738024806 89.30849 17.0557846719593 0.3610013 18
ILMN_1735698 7.71472300915807 88.67307 19.8504742164589 0.3939394 23
ILMN_1653355 7.8099041590364 98.95518 20.3896500296934 0.09617918 15
ILMN_1717783 7.84637454692839 103.1255 26.2155864313705 0.07114624 19
ILMN_1705025 7.68531009116767 85.50566 22.5708843374613 0.5823452 29
ILMN_1814316 8.02535452401451 124.9367 40.4447904877748 0.01581028 15
ILMN_2359168 7.93130655472019 112.9383 27.161505 0.03030303 25
ILMN_1731507 7.64573372981316 81.2421 13.4553181875662 0.8076416 26
ILMN_1787689 7.84659519383532 103.1512 27.0257059484957 0.07114624 26
ILMN_1745607 11.8258982527544 2612.729 528.967309954027 0 24
ILMN_2136495 7.58198870425938 73.73611 8.96580152713632 0.9868248 15
ILMN_1668111 7.68712017909041 85.69907 19.2079714246484 0.5744401 21

Total number of rows: 48803

Table truncated, full table size 3167 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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