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Sample GSM786793 Query DataSets for GSM786793
Status Public on Apr 30, 2012
Title MM-11
Sample type RNA
 
Source name myometrium
Organism Homo sapiens
Characteristics tissue: myometrium
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description myometrium sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.69581819841699 86.93987 16.3472718766591 0.5151515 28
ILMN_2055271 7.82579347088701 100.8056 34.8393821920539 0.08959157 10
ILMN_1736007 7.69804825361895 87.17206 14.0920864697217 0.5098814 17
ILMN_2383229 7.63954657881815 80.90228 12.3615365765374 0.8392622 17
ILMN_1806310 7.80673452823584 98.65518 28.8486484480784 0.1225296 15
ILMN_1779670 7.77514670691935 95.24177 17.9328832989588 0.2068511 27
ILMN_2321282 7.86915790794715 105.7082 23.1679696504719 0.05928854 17
ILMN_1671474 7.69523534732471 86.87083 15.65076 0.5204216 16
ILMN_1772582 7.73152410313791 90.63435 19.1225245365045 0.3557312 19
ILMN_1735698 7.74321747379732 91.87788 15.4162360186468 0.3175231 24
ILMN_1653355 7.75170252333673 92.76505 27.0054052661731 0.284585 12
ILMN_1717783 7.68139416412194 85.38407 14.8759631365367 0.6060606 19
ILMN_1705025 7.64588075819681 81.6405 16.5162473212837 0.7918314 19
ILMN_1814316 7.64676760302726 81.73373 14.1670831692886 0.7865613 21
ILMN_2359168 7.72140701651585 89.59291 17.8028670279135 0.4084322 18
ILMN_1731507 7.65265903769505 82.38889 16.5184966553425 0.7536232 18
ILMN_1787689 7.76133893791804 93.81199 17.7875201981673 0.2450593 19
ILMN_1745607 12.103595435931 3191.79 674.046668235486 0 24
ILMN_2136495 7.65248491575776 82.36696 10.9985002224112 0.7536232 19
ILMN_1668111 7.6955971766937 86.92212 19.5735144244774 0.5151515 26

Total number of rows: 48803

Table truncated, full table size 3155 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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