NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM786796 Query DataSets for GSM786796
Status Public on Apr 30, 2012
Title LM-17
Sample type RNA
 
Source name leiomyoma
Organism Homo sapiens
Characteristics tissue: leiomyoma
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description leiomyoma sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.79782981318068 151.2962 60.6671728532754 0.1449275 23
ILMN_2055271 7.84376425152956 162.8148 52.4990147658982 0.08036891 19
ILMN_1736007 7.81116548443928 154.6472 49.3870420879002 0.1212121 30
ILMN_2383229 7.64374253478746 112.6236 35.0751082832719 0.8458498 14
ILMN_1806310 7.74200123062523 137.1425 46.327049885215 0.3214756 17
ILMN_1779670 7.71120002338833 129.2717 37.3097852020463 0.4716733 23
ILMN_2321282 7.85269887619324 165.142 42.1329433733788 0.07378129 23
ILMN_1671474 7.77816352493818 146.3532 55.451633249541 0.1857708 26
ILMN_1772582 7.71677001968036 130.725 39.1766332003139 0.4400527 18
ILMN_1735698 7.71080072757548 129.173 33.5150928226248 0.4716733 34
ILMN_1653355 7.78796984112842 148.8198 34.9534300321037 0.1594203 17
ILMN_1717783 7.6221823373316 107.3998 32.7742385270773 0.9235837 15
ILMN_1705025 7.68792890753434 123.3939 37.7343525740377 0.5968379 22
ILMN_1814316 7.57789429234512 97.7266 10.8900764329231 0.9960474 7
ILMN_2359168 7.68765356801691 123.3308 35.6488304047272 0.5981554 10
ILMN_1731507 7.66244500595588 117.1747 34.7224719434834 0.7404479 26
ILMN_1787689 7.78400878589086 147.8926 45.6880247486892 0.1699605 40
ILMN_1745607 12.0145357403091 5563.328 1416.53610233511 0 27
ILMN_2136495 7.67530711097349 120.2607 37.1379568293446 0.6679842 22
ILMN_1668111 7.62530298038408 108.0326 20.7350238890326 0.9169961 18

Total number of rows: 48803

Table truncated, full table size 3158 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap