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Sample GSM786797 Query DataSets for GSM786797
Status Public on Apr 30, 2012
Title MM-17
Sample type RNA
 
Source name myometrium
Organism Homo sapiens
Characteristics tissue: myometrium
Extracted molecule total RNA
Extraction protocol RNeasy kit
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description myometrium sample
Data processing The data was preprocessed by Bioconductor lumi package (version 2.5.5). It was vst transformed and quantile normalized.
 
Submission date Aug 29, 2011
Last update date Apr 30, 2012
Contact name Antonia Navarro
Organization name Northwestern University
Department OB/GYN
Lab Bulun
Street address 303 E. Superior st
City Chicago
State/province IL
ZIP/Postal code 60610
Country USA
 
Platform ID GPL6947
Series (1)
GSE31699 Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_1762337 7.67166696019405 108.0106 32.0324838318376 0.6837944 35
ILMN_2055271 7.80641792794056 137.8972 35.9558246322865 0.1317523 15
ILMN_1736007 7.72622553493457 119.8414 31.4727781298895 0.3781291 28
ILMN_2383229 7.72358788262977 119.2496 40.863740432421 0.3913043 19
ILMN_1806310 7.8028895055238 137.1351 52.0503879615974 0.1370224 22
ILMN_1779670 7.69155388174083 112.3027 37.19193 0.5757576 25
ILMN_2321282 7.74360597301406 123.6553 23.5936254418304 0.3096179 12
ILMN_1671474 7.67349123364668 108.3938 33.7469071340648 0.6693017 26
ILMN_1772582 7.68927752703171 111.7988 30.232045 0.5889328 25
ILMN_1735698 7.70438443544365 115.1209 29.8198665455235 0.5006588 23
ILMN_1653355 7.74834702958479 124.7429 37.2930977069109 0.2898551 27
ILMN_1717783 7.68991264432868 111.942 32.4413672274208 0.5862978 15
ILMN_1705025 7.71890663281765 118.2636 35.0177716455104 0.4242424 22
ILMN_1814316 7.7812644187112 132.234 49.4278801503969 0.1857708 20
ILMN_2359168 7.65690231273776 104.7997 27.1983023117335 0.7681159 28
ILMN_1731507 7.65747631673635 104.9292 34.9217851964271 0.7628459 17
ILMN_1787689 7.86785904788548 151.9245 59.52656 0.06192358 16
ILMN_1745607 12.16058450785 5705.182 2467.59625481966 0 17
ILMN_2136495 7.71151588526838 116.6314 30.1375107220022 0.4532279 17
ILMN_1668111 7.63885878557729 101.0285 27.7267420417704 0.8524374 20

Total number of rows: 48803

Table truncated, full table size 3165 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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