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GEO accession:
Sample GSM790425
Query DataSets for GSM790425
Status
Public on Apr 30, 2012
Title
LM-12
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.399700598802395
3738
5514
3.678e-38
cg00002426
0.455429819336907
2294
2643
3.678e-38
cg00003994
0.0621936274509804
609
9083
3.678e-38
cg00005847
0.790333445604581
4693
1145
3.678e-38
cg00006414
0.0776069642526394
419
4880
3.678e-38
cg00007981
0.0766732042167198
1251
14965
3.678e-38
cg00008493
0.956701030927835
14384
551
3.678e-38
cg00008713
0.0278358005630733
613
21309
3.678e-38
cg00009407
0.0273414776032577
470
16620
3.678e-38
cg00010193
0.597812368531763
17052
11372
3.678e-38
cg00011459
0.876088218224028
6038
754
3.678e-38
cg00012199
0.0399859390104579
455
10824
3.678e-38
cg00012386
0.0549962493584429
1393
23836
3.678e-38
cg00012792
0.0555978889735557
1970
33363
3.678e-38
cg00013618
0.769230769230769
6900
1970
3.678e-38
cg00014085
0.0417690417690418
544
12380
3.678e-38
cg00014837
0.696298100340964
2859
1147
3.678e-38
cg00015770
0.086015239802779
1919
20291
3.678e-38
cg00016968
0.577928321678322
13223
9557
3.678e-38
cg00019495
0.369673113126818
4320
7266
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1334 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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