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GEO accession:
Sample GSM790426
Query DataSets for GSM790426
Status
Public on Apr 30, 2012
Title
MM-12
Sample type
genomic
Source name
myometrium
Organism
Homo sapiens
Characteristics
tissue: myometrium
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
myometrium sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.532228713724739
5557
4784
3.678e-38
cg00002426
0.232357401143124
1992
6481
3.678e-38
cg00003994
0.106097442380628
1091
9092
3.678e-38
cg00005847
0.812614074224295
4007
824
3.678e-38
cg00006414
0.0909090909090909
519
5090
3.678e-38
cg00007981
0.0690172960347033
1241
16640
3.678e-38
cg00008493
0.953811405985319
16892
718
3.678e-38
cg00008713
0.0383641309445643
818
20404
3.678e-38
cg00009407
0.0256188520159983
474
17928
3.678e-38
cg00010193
0.60171568627451
21113
13875
3.678e-38
cg00011459
0.871266592920354
6301
831
3.678e-38
cg00012199
0.0444426713476422
557
11876
3.678e-38
cg00012386
0.0483976992604766
1178
23062
3.678e-38
cg00012792
0.0523376198779425
1921
34683
3.678e-38
cg00013618
0.803392303483494
8810
2056
3.678e-38
cg00014085
0.0530744336569579
738
13067
3.678e-38
cg00014837
0.664342833709248
3240
1537
3.678e-38
cg00015770
0.0785724428456478
1660
19367
3.678e-38
cg00016968
0.485009993337775
12376
13041
3.678e-38
cg00019495
0.299165418360796
4194
9725
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1336 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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