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GEO accession:
Sample GSM790427
Query DataSets for GSM790427
Status
Public on Apr 30, 2012
Title
LM-4
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.308704808704809
3518
7778
3.678e-38
cg00002426
0.438537020517395
2458
3047
3.678e-38
cg00003994
0.102040816326531
1065
9272
3.678e-38
cg00005847
0.782687105500451
4340
1105
3.678e-38
cg00006414
0.0943009430094301
460
4318
3.678e-38
cg00007981
0.0655814773461832
1116
15801
3.678e-38
cg00008493
0.961876141653409
16324
547
3.678e-38
cg00008713
0.0333269762563173
699
20175
3.678e-38
cg00009407
0.0324951840210889
641
18985
3.678e-38
cg00010193
0.591465640242891
17825
12212
3.678e-38
cg00011459
0.858699411968177
4965
717
3.678e-38
cg00012199
0.0427076826983136
547
12161
3.678e-38
cg00012386
0.0476966979209132
1053
20924
3.678e-38
cg00012792
0.0560611828217462
1620
27177
3.678e-38
cg00013618
0.798912506178942
8081
1934
3.678e-38
cg00014085
0.0351712887438825
539
14686
3.678e-38
cg00014837
0.681945743685688
2916
1260
3.678e-38
cg00015770
0.0692527876276328
1621
21686
3.678e-38
cg00016968
0.499817481241128
12323
12232
3.678e-38
cg00019495
0.238861741879851
2493
7844
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1333 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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