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GEO accession:
Sample GSM790431
Query DataSets for GSM790431
Status
Public on Apr 30, 2012
Title
LM-8
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.671664584201027
4838
2265
3.678e-38
cg00002426
0.427032060662498
3210
4207
3.678e-38
cg00003994
0.0574223168540821
863
14066
3.678e-38
cg00005847
0.773681600264506
4680
1269
3.678e-38
cg00006414
0.0964437572477773
499
4575
3.678e-38
cg00007981
0.0700375642546461
1417
18715
3.678e-38
cg00008493
0.959823177214482
17153
618
3.678e-38
cg00008713
0.0317125684040549
707
21487
3.678e-38
cg00009407
0.0270369017172086
592
21204
3.678e-38
cg00010193
0.610181513363639
18926
11991
3.678e-38
cg00011459
0.872
5995
780
3.678e-38
cg00012199
0.0476643029461218
652
12927
3.678e-38
cg00012386
0.0430966933082589
1100
24324
3.678e-38
cg00012792
0.0468376658893975
1627
33010
3.678e-38
cg00013618
0.833811593014676
10170
1927
3.678e-38
cg00014085
0.0600331980818886
651
10093
3.678e-38
cg00014837
0.810092127303183
3869
807
3.678e-38
cg00015770
0.0995847572851211
2710
24403
3.678e-38
cg00016968
0.640929675511808
17125
9494
3.678e-38
cg00019495
0.233275802554367
3379
11006
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1335 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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