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GEO accession:
Sample GSM790435
Query DataSets for GSM790435
Status
Public on Apr 30, 2012
Title
LM-5
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.219453856886586
2202
7732
3.678e-38
cg00002426
0.719314244026993
3944
1439
3.678e-38
cg00003994
0.0523624715086552
850
15283
3.678e-38
cg00005847
0.739030023094688
4160
1369
3.678e-38
cg00006414
0.106248767987384
539
4434
3.678e-38
cg00007981
0.0703066191599338
1401
18426
3.678e-38
cg00008493
0.963291952054795
18002
586
3.678e-38
cg00008713
0.0326048171275647
731
21589
3.678e-38
cg00009407
0.0271521887491469
557
19857
3.678e-38
cg00010193
0.567120913274759
18977
14385
3.678e-38
cg00011459
0.683383365707222
3870
1693
3.678e-38
cg00012199
0.0444194996792816
554
11818
3.678e-38
cg00012386
0.0458874778499705
1243
25745
3.678e-38
cg00012792
0.0879604911906033
3295
34065
3.678e-38
cg00013618
0.824677618795266
9337
1885
3.678e-38
cg00014085
0.0481370944449793
500
9787
3.678e-38
cg00014837
0.755469399058433
2728
783
3.678e-38
cg00015770
0.0638210008634606
1700
24837
3.678e-38
cg00016968
0.621488549618321
16283
9817
3.678e-38
cg00019495
0.365068191816982
4149
7116
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1335 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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