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GEO accession:
Sample GSM790436
Query DataSets for GSM790436
Status
Public on Apr 30, 2012
Title
MM-5
Sample type
genomic
Source name
myometrium
Organism
Homo sapiens
Characteristics
tissue: myometrium
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
myometrium sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.370480302212628
2746
4566
3.678e-38
cg00002426
0.27904
1744
4406
3.678e-38
cg00003994
0.0958031585376494
1098
10263
3.678e-38
cg00005847
0.69259044302573
3580
1489
3.678e-38
cg00006414
0.0906796116504854
467
4583
3.678e-38
cg00007981
0.0904486251808972
1500
14984
3.678e-38
cg00008493
0.964162323593137
16465
512
3.678e-38
cg00008713
0.0363626391707344
663
17470
3.678e-38
cg00009407
0.0328515874397818
566
16563
3.678e-38
cg00010193
0.585397996837111
17768
12484
3.678e-38
cg00011459
0.839958314723835
5642
975
3.678e-38
cg00012199
0.0472049689440994
570
11405
3.678e-38
cg00012386
0.0531375633630484
1216
21568
3.678e-38
cg00012792
0.0600909674033471
2061
32137
3.678e-38
cg00013618
0.713021491782554
7896
3078
3.678e-38
cg00014085
0.0597205824478552
607
9457
3.678e-38
cg00014837
0.724663908996898
2803
965
3.678e-38
cg00015770
0.100199620234675
2058
18381
3.678e-38
cg00016968
0.595301587301587
14064
9461
3.678e-38
cg00019495
0.279881154499151
3297
8383
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1335 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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