GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM790439
Query DataSets for GSM790439
Status
Public on Apr 30, 2012
Title
LM-3
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.363439975311182
3533
6088
3.678e-38
cg00002426
0.322693083837828
1759
3592
3.678e-38
cg00003994
0.106011284722222
977
8139
3.678e-38
cg00005847
0.824407039020658
4310
818
3.678e-38
cg00006414
0.0841491355967507
404
4297
3.678e-38
cg00007981
0.0660140344797713
762
10681
3.678e-38
cg00008493
0.959846100034977
13721
474
3.678e-38
cg00008713
0.0391869620948544
642
15641
3.678e-38
cg00009407
0.0244386552536906
394
15628
3.678e-38
cg00010193
0.576036154351269
14913
10876
3.678e-38
cg00011459
0.875841303577754
4945
601
3.678e-38
cg00012199
0.0257813224520078
278
10405
3.678e-38
cg00012386
0.101536544850498
1956
17208
3.678e-38
cg00012792
0.0521798249341378
1228
22206
3.678e-38
cg00013618
0.825763138571279
7872
1561
3.678e-38
cg00014085
0.0355261799029227
344
9239
3.678e-38
cg00014837
0.762757146673791
2855
788
3.678e-38
cg00015770
0.0762264954988547
1431
17242
3.678e-38
cg00016968
0.537380832915203
11781
10042
3.678e-38
cg00019495
0.564074970854632
6290
4761
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1329 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
