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GEO accession:
Sample GSM790443
Query DataSets for GSM790443
Status
Public on Apr 30, 2012
Title
LM-14
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.239670468948035
1891
5899
3.678e-38
cg00002426
0.529093717816684
2055
1729
3.678e-38
cg00003994
0.163839769036449
1362
6851
3.678e-38
cg00005847
0.800268456375839
2981
644
3.678e-38
cg00006414
0.0853914871255912
325
3381
3.678e-38
cg00007981
0.0906868543490261
1150
11431
3.678e-38
cg00008493
0.9594367841249
13151
456
3.678e-38
cg00008713
0.0325114272838473
505
14928
3.678e-38
cg00009407
0.0225484261501211
298
12818
3.678e-38
cg00010193
0.587001733102253
13548
9432
3.678e-38
cg00011459
0.672514619883041
2875
1300
3.678e-38
cg00012199
0.0359287976411488
329
8728
3.678e-38
cg00012386
0.0846519862786323
1530
16444
3.678e-38
cg00012792
0.0689727113410665
1653
22213
3.678e-38
cg00013618
0.606194690265487
4795
3015
3.678e-38
cg00014085
0.0366525423728814
346
8994
3.678e-38
cg00014837
0.822358794263974
2810
507
3.678e-38
cg00015770
0.0666148882781694
1115
15523
3.678e-38
cg00016968
0.591617499721697
10629
7237
3.678e-38
cg00019495
0.194740668928745
1607
6545
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1327 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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