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GEO accession:
Sample GSM790444
Query DataSets for GSM790444
Status
Public on Apr 30, 2012
Title
MM-14
Sample type
genomic
Source name
myometrium
Organism
Homo sapiens
Characteristics
tissue: myometrium
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
myometrium sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.547127087461081
3866
3100
3.678e-38
cg00002426
0.174508636092912
1172
5444
3.678e-38
cg00003994
0.107361316178022
1018
8364
3.678e-38
cg00005847
0.795148247978437
4130
964
3.678e-38
cg00006414
0.0745050010206165
365
4434
3.678e-38
cg00007981
0.0908941890009016
1109
10992
3.678e-38
cg00008493
0.961535696311741
13374
435
3.678e-38
cg00008713
0.0272578380907815
466
16530
3.678e-38
cg00009407
0.0146386093321134
208
13901
3.678e-38
cg00010193
0.61150003932982
15548
9778
3.678e-38
cg00011459
0.865927419354839
5154
698
3.678e-38
cg00012199
0.0334552495697074
311
8885
3.678e-38
cg00012386
0.0630630630630631
1113
16436
3.678e-38
cg00012792
0.0691531935328958
1728
23160
3.678e-38
cg00013618
0.827084499160604
7390
1445
3.678e-38
cg00014085
0.0425058192490639
420
9361
3.678e-38
cg00014837
0.759004923555325
2929
830
3.678e-38
cg00015770
0.0774000918695452
1348
15968
3.678e-38
cg00016968
0.480111008325624
9861
10578
3.678e-38
cg00019495
0.197789712869242
1915
7667
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1328 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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