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GEO accession:
Sample GSM790450
Query DataSets for GSM790450
Status
Public on Apr 30, 2012
Title
MM-18
Sample type
genomic
Source name
myometrium
Organism
Homo sapiens
Characteristics
tissue: myometrium
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
myometrium sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.674627344125661
4209
1930
3.678e-38
cg00002426
0.269106298232512
1081
2836
3.678e-38
cg00003994
0.0617066290550071
175
2561
3.678e-38
cg00005847
0.764217367755913
4233
1206
3.678e-38
cg00006414
0.0811225608419206
370
4091
3.678e-38
cg00007981
0.0336185082540065
279
7920
3.678e-38
cg00008493
0.968297036772581
13561
344
3.678e-38
cg00008713
0.0268325981936568
511
18433
3.678e-38
cg00009407
0.0184759916492693
354
18706
3.678e-38
cg00010193
0.707635422444075
19138
7807
3.678e-38
cg00011459
0.842383638928068
2389
347
3.678e-38
cg00012199
0.0310590631364562
366
11318
3.678e-38
cg00012386
0.0227303847733808
332
14174
3.678e-38
cg00012792
0.0275434897206115
418
14658
3.678e-38
cg00013618
0.85868326466205
9795
1512
3.678e-38
cg00014085
0.027495114226026
408
14331
3.678e-38
cg00014837
0.794305142371441
1869
384
3.678e-38
cg00015770
0.0774502393550013
1537
18208
3.678e-38
cg00016968
0.56686056400313
16664
12633
3.678e-38
cg00019495
0.230587730587731
1075
3487
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1324 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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