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GEO accession:
Sample GSM790451
Query DataSets for GSM790451
Status
Public on Apr 30, 2012
Title
LM-16
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.355440923605994
2894
5148
3.678e-38
cg00002426
0.248051507963402
732
2119
3.678e-38
cg00003994
0.137727622467299
537
3262
3.678e-38
cg00005847
0.813939575231828
5442
1144
3.678e-38
cg00006414
0.0622533976326173
284
4178
3.678e-38
cg00007981
0.0332151300236407
281
8079
3.678e-38
cg00008493
0.953565256593283
12691
518
3.678e-38
cg00008713
0.0230253570387642
474
20012
3.678e-38
cg00009407
0.0152232383001614
283
18207
3.678e-38
cg00010193
0.702702702702703
18460
7710
3.678e-38
cg00011459
0.850746268656716
2337
310
3.678e-38
cg00012199
0.026370736988632
341
12490
3.678e-38
cg00012386
0.0199904523212794
335
16323
3.678e-38
cg00012792
0.0265774190373068
540
19678
3.678e-38
cg00013618
0.805913978494624
8994
2066
3.678e-38
cg00014085
0.0290518729825088
387
12834
3.678e-38
cg00014837
0.740448504983389
1783
525
3.678e-38
cg00015770
0.0789382071366406
1814
21066
3.678e-38
cg00016968
0.49034209034209
12972
13383
3.678e-38
cg00019495
0.131202196509119
669
4330
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1326 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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