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GEO accession:
Sample GSM790455
Query DataSets for GSM790455
Status
Public on Apr 30, 2012
Title
LM-17
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.362523248605084
2339
4013
3.678e-38
cg00002426
0.675461741424802
1792
761
3.678e-38
cg00003994
0.0517857142857143
203
3617
3.678e-38
cg00005847
0.800772863890082
5595
1292
3.678e-38
cg00006414
0.0789179521573888
353
4020
3.678e-38
cg00007981
0.0417116145271485
348
7895
3.678e-38
cg00008493
0.9623826768162
13022
409
3.678e-38
cg00008713
0.0243123519109921
472
18842
3.678e-38
cg00009407
0.0205026455026455
372
17672
3.678e-38
cg00010193
0.687632425645452
17525
7861
3.678e-38
cg00011459
0.858508604206501
2245
270
3.678e-38
cg00012199
0.0349164193094829
447
12255
3.678e-38
cg00012386
0.0263320941759603
340
12472
3.678e-38
cg00012792
0.0227436081733237
443
18935
3.678e-38
cg00013618
0.767298911134528
8738
2550
3.678e-38
cg00014085
0.0342212356640769
370
10342
3.678e-38
cg00014837
0.798283261802575
1860
370
3.678e-38
cg00015770
0.0731814411865151
1500
18897
3.678e-38
cg00016968
0.570045110292596
13774
10289
3.678e-38
cg00019495
0.118996569468268
555
4009
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1324 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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