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GEO accession:
Sample GSM790459
Query DataSets for GSM790459
Status
Public on Apr 30, 2012
Title
LM-1
Sample type
genomic
Source name
leiomyoma
Organism
Homo sapiens
Characteristics
tissue: leiomyoma
Extracted molecule
genomic DNA
Extraction protocol
standard as recommended by illumina
Label
Cy3
Label protocol
standard as recommended by illumina
Hybridization protocol
standard as recommended by illumina
Scan protocol
standard as recommended by illumina
Description
leiomyoma sample
Data processing
Genome Studio output
Submission date
Sep 05, 2011
Last update date
Apr 30, 2012
Contact name
Antonia Navarro
Organization name
Northwestern University
Department
OB/GYN
Lab
Bulun
Street address
303 E. Superior st
City
Chicago
State/province
IL
ZIP/Postal code
60610
Country
USA
Platform ID
GPL8490
Series (1)
GSE31699
Relationship between Genome-Wide DNA Methylation and Gene Expression in Uterine Leiomyoma
Data table header descriptions
ID_REF
Illumina ID
VALUE
Beta-value
METHYLATED
the intensities measured by methylated probes
UNMETHYLATED
the intensities measured by unmethylated probes
Detection_Pval
the detection p-value of the probe
Data table
ID_REF
VALUE
METHYLATED
UNMETHYLATED
Detection_Pval
cg00000292
0.137791386803635
1395
8629
3.678e-38
cg00002426
0.79983879634605
2977
645
3.678e-38
cg00003994
0.136639922197909
562
3451
3.678e-38
cg00005847
0.810751206064783
5882
1273
3.678e-38
cg00006414
0.136144363051635
762
4735
3.678e-38
cg00007981
0.0437467294610152
418
9037
3.678e-38
cg00008493
0.948337659127426
15346
736
3.678e-38
cg00008713
0.0391912908242613
882
21523
3.678e-38
cg00009407
0.0411817367949866
828
19178
3.678e-38
cg00010193
0.67167495854063
20251
9799
3.678e-38
cg00011459
0.847429970084308
3116
461
3.678e-38
cg00012199
0.0417996370690195
668
15213
3.678e-38
cg00012386
0.0339525944907111
583
16488
3.678e-38
cg00012792
0.0326896686924132
667
19637
3.678e-38
cg00013618
0.803567379638727
10632
2499
3.678e-38
cg00014085
0.0493954206328788
768
14680
3.678e-38
cg00014837
0.765630993479095
1996
511
3.678e-38
cg00015770
0.094607635002123
2451
23356
3.678e-38
cg00016968
0.469433111088997
14152
15895
3.678e-38
cg00019495
0.132111360885354
764
4919
3.678e-38
Total number of rows:
27578
Table truncated, full table size
1331 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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