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Sample GSM851286 Query DataSets for GSM851286
Status Public on Jul 01, 2012
Title RenLab-CTCF-embryonic-heart
Sample type SRA
 
Source name Mouse E14.5 heart
Organism Mus musculus
Characteristics strain: C57Bl/6
antibody: Kim et al., 2007
Treatment protocol None
Growth protocol Cells were derived from E14.5 C57Bl/6 mouse embryos
Extracted molecule genomic DNA
Extraction protocol See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description CTCF IP
Data processing fastq: Illumina's Genome Analyzer Pipeline
bowtie files: Alignment to mm9 using Bowtie with a seed length of 32 bases and up to 2 mismatches. Only sequences mapping to exactly one location were kept.
 
Submission date Dec 20, 2011
Last update date May 15, 2019
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL13112
Series (2)
GSE29184 A draft map of cis-regulatory sequences in the mouse genome
GSE29218 A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq]
Relations
SRA SRX112936
BioSample SAMN00768110

Supplementary file Size Download File type/resource
GSM851286_RenLab-CTCF-embryonic-heart-DM529.bowtie.gz 159.4 Mb (ftp)(http) BOWTIE
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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