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Report for CCDS3086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3086.1 Public Homo sapiens 3 CEP63 24 110 108 CCDS HistoryNCBI Gene:80254Re-query CCDS DB by CCDS ID:3086.1Re-query CCDS DB by GeneID:80254See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3086.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513612.7 ENSP00000426129.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513612.7Link to Ensembl Protein Viewer:ENSP00000426129.1Re-query CCDS DB by Nucleotide ID:ENST00000513612Re-query CCDS DB by Protein ID:ENSP00000426129
Original member Current member EBI ENST00000606977.5 ENSP00000475903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000606977.5Link to Ensembl Protein Viewer:ENSP00000475903.1Re-query CCDS DB by Nucleotide ID:ENST00000606977Re-query CCDS DB by Protein ID:ENSP00000475903
Original member Current member EBI ENST00000675561.1 ENSP00000502085.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000675561.1Link to Ensembl Protein Viewer:ENSP00000502085.1Re-query CCDS DB by Nucleotide ID:ENST00000675561Re-query CCDS DB by Protein ID:ENSP00000502085
Original member Current member EBI ENST00000683596.1 ENSP00000506896.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000683596.1Link to Ensembl Protein Viewer:ENSP00000506896.1Re-query CCDS DB by Nucleotide ID:ENST00000683596Re-query CCDS DB by Protein ID:ENSP00000506896
Original member Current member NCBI NM_001353108.3 NP_001340037.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001353108.3Link to Protein Sequence:NP_001340037.1Re-query CCDS DB by Nucleotide ID:NM_001353108Re-query CCDS DB by Protein ID:NP_001340037Link to BLAST:NP_001340037.1
Original member Current member NCBI NM_025180.5 NP_079456.2 Accepted alive Link to Nucleotide Sequence:NM_025180.5Link to Protein Sequence:NP_079456.2Re-query CCDS DB by Nucleotide ID:NM_025180Re-query CCDS DB by Protein ID:NP_079456Link to BLAST:NP_079456.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340037.1 703 Q96MT8-1 703 100% 0 0
NP_079456.2 703 Q96MT8-1 703 100% 0 0

Chromosomal Locations for CCDS 3086.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 134495321 134495364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134507109 134507286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134531845 134531940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134532778 134532900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134537155 134537268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134545586 134545819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134546149 134546288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134547335 134547472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134549062 134549176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134550063 134550260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134551926 134552012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134558142 134558347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134559150 134559429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134561377 134561535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGAGGCTTTGTTAGAAGGAATACAAAATCGAGGGCATGGTGGGGGATTTTTGACATCTTGTGAAGCAG
AACTACAGGAGCTCATGAAACAGATTGACATAATGGTGGCTCATAAAAAATCTGAATGGGAAGGACGTAC
ACATGCTCTAGAAACTTGCTTGAAAATCCGTGAACAGGAACTTAAGAGTCTTAGGAGTCAGTTGGATGTG
ACACATAAGGAGGTTGGAATGTTGCATCAGCAGGTAGAAGAACATGAAAAAATCAAGCAAGAGATGACCA
TGGAATATAAGCAGGAGTTGAAGAAACTACATGAAGAATTATGCATACTGAAGAGAAGCTATGAAAAGCT
TCAGAAAAAGCAAATGAGGGAATTCAGAGGAAATACCAAAAATCACAGGGAAGATCGGTCTGAAATTGAG
AGGTTAACTGCAAAAATAGAGGAATTCCGTCAGAAATCGCTGGACTGGGAGAAGCAACGCTTGATTTATC
AGCAACAGGTATCTTCACTGGAGGCACAAAGGAAGGCTCTGGCTGAACAATCAGAGATAATTCAGGCTCA
GCTTGTCAATCGGAAACAGAAATTAGAGTCTGTGGAACTTTCTAGCCAATCAGAAATTCAACACTTAAGC
AGTAAACTGGAGCGGGCTAATGACACTATCTGTGCCAATGAGTTGGAAATAGAGCGCCTCACCATGAGGG
TCAATGACTTGGTTGGAACCAGTATGACTGTCCTACAGGAGCAGCAGCAAAAAGAAGAAAAATTGAGGGA
ATCTGAAAAACTATTAGAGGCTCTGCAGGAAGAAAAGAGAGAATTGAAGGCAGCTCTTCAGTCTCAAGAA
AATCTCATACATGAGGCCAGAATACAAAAGGAGAAGTTACAAGAAAAAGTAAAGGCAACTAACACTCAAC
ATGCTGTAGAAGCTATAAGGCCACGGGAAGAATCTCTGGCAGAAAAGAAGTACACCTCTCAAGGGCAGGG
GGACTTAGACAGTGTGCTCTCCCAGTTGAATTTTACCCATACTAGTGAGGACCTTCTGCAGGCAGAGGTG
ACTTGTCTTGAAGGCAGTTTGGAATCTGTGAGTGCAACGTGTAAACAGCTGAGCCAAGAACTAATGGAAA
AATATGAAGAACTGAAGAGGATGGAAGCACATAACAATGAATACAAAGCAGAGATTAAGAAGTTGAAAGA
ACAGATTTTACAGGGTGAACAAAGTTACAGTTCTGCACTAGAAGGAATGAAGATGGAAATCTCCCATCTA
ACTCAGGAGTTACATCAGCGAGATATCACTATTGCTTCCACCAAAGGTTCTTCCTCAGACATGGAAAAGC
GACTCAGAGCAGAGATGCAAAAGGCAGAAGACAAAGCAGTAGAGCATAAGGAGATTTTGGATCAGCTGGA
GTCACTCAAATTAGAAAATCGTCATCTTTCTGAAATGGTGATGAAATTGGAATTGGGTTTACATGAGGCA
AAAGAGATTTCACTAGCAGACCTCCAGGAGAATTATATTGAGGCATTAAATAAATTAGTGTCTGAAAATC
AACAACTACAGAAAGATTTGATGAATACCAAATCTCAGCTGGAGATTTCTACTCAGATGTGCAAAAAACA
AAATGACAGGATCTTTAAACCAACACACAGCAGAACAACTGAGTTCAAGAATACAGAGTTCAAGCCAACC
CATGGCCAGCACAGACATGATGGAATAAAGACTGAGCACTACAAAACAGATCTTCATTCTCCAAGAGGAC
AAGCGTCGGATAGTATAAACCCCATGTCTAGGGTGCTAAGCCCCCTGAGTCCTCAAATCAGCCCTTGCAG
CTCCACCAGGTCTTTGACTTCCTACTCTCTATGTAAAACTCATTCTTTGCCTTCAGCGCTAGATACAAAT
GAAGCCAATTTTTCTGACACTATGTCTGAGAGTATGAATGACCAAGAAGAGTTTATATCTTCGTGTTCCT
TGCCTGTATCTCCCCTTGGTTCAATAGCTACCAGATTTTTGGAAGAGGAGGAACTGAGGTCTCATCACAT
TCTAGAGCGCTTGGATGCCCATATTGAAGAACTAAAAAGAGAGAGTGAAAAGACAGTGAGACAATTCACA
GCCTTAAAGTAG

Translation (703 aa):
MEALLEGIQNRGHGGGFLTSCEAELQELMKQIDIMVAHKKSEWEGRTHALETCLKIREQELKSLRSQLDV
THKEVGMLHQQVEEHEKIKQEMTMEYKQELKKLHEELCILKRSYEKLQKKQMREFRGNTKNHREDRSEIE
RLTAKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEIQHLS
SKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEALQEEKRELKAALQSQE
NLIHEARIQKEKLQEKVKATNTQHAVEAIRPREESLAEKKYTSQGQGDLDSVLSQLNFTHTSEDLLQAEV
TCLEGSLESVSATCKQLSQELMEKYEELKRMEAHNNEYKAEIKKLKEQILQGEQSYSSALEGMKMEISHL
TQELHQRDITIASTKGSSSDMEKRLRAEMQKAEDKAVEHKEILDQLESLKLENRHLSEMVMKLELGLHEA
KEISLADLQENYIEALNKLVSENQQLQKDLMNTKSQLEISTQMCKKQNDRIFKPTHSRTTEFKNTEFKPT
HGQHRHDGIKTEHYKTDLHSPRGQASDSINPMSRVLSPLSPQISPCSSTRSLTSYSLCKTHSLPSALDTN
EANFSDTMSESMNDQEEFISSCSLPVSPLGSIATRFLEEEELRSHHILERLDAHIEELKRESEKTVRQFT
ALK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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