CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS18656.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18656.1 |
Public |
Mus musculus |
4 |
5730409E04Rik |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:230757](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18656.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:230757](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 18656.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000097886.3 |
ENSMUSP00000095496.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000097886.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000095496.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000097886](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000095496](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000164362.1 |
ENSMUSP00000128538.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000164362.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000128538.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000164362](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000128538](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001013755.3 |
NP_001013777.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001013755.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001013777.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001013755](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001013777](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001013755.4 |
NP_001013777.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001013755.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001013777.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001013755](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001013777](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001013777.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001145950.1 |
NP_001139422.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001145950.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001139422.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001145950](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001139422](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001145950.2 |
NP_001139422.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001145950.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001139422.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001145950](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001139422](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001139422.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 18656.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (693 nt): ATGTTCGCTGCCATCCAGCCAGGACTAGCAGAGGGGGCCCAGTACCCAGGGAGCCTGCCTCCTGGAGTAT GCCAACCAGACCTCCAACCAGACAATAACTCCAACTTTGTGGAGAGTGCTAAGGATGCCAATAAGAACTG GCATGGTGTGCCAGGCAAAGTGGATCCTATTCTGATAAGGAGCTCCTCTGAGTCACCCTCTGATAACCAG GTCTTCCAAGCCACCAGGCTCCCTGAGGCCGGAGTCCGCAGTCCCCCGGAGGGTGCGGAGATCCCTGGTG CTGAGCCAGAGAAGTTGAGCGGTGCCAGCAGTGTCTGCTCTCCTCTGGAGGACATTGGCTATGCCAGCAG TTCCTTGAGCATCGACAGCTTCAGCAGCAGTCCAGAACCTGTCTGCGATACCCCTCGAGGTCCGAGCCCT CTGGATCCCCTTCTGCCCTCCGTGGCCCAGGCCGTGCAGCAGCTGCAGGCTCAGGAGCGCTACAAAGAAC AGGAGAAGGAGAAACACCACGCGCATTTGGTGATGTATCGGCGCTTGGCGCTGCTCCAGTGGATCCGGGC TCTGCAGCACCAGTTGGTCGACCAGCAGGCCCGACTGCAAGAGAGCTTTGACACCATCCTGGACAACCGG AAGGAGCTTATCCGCTGTCTGCAACAGAGGGAAGCACCTTGCAGGCACCAGGACCAGGGCTAA
Translation (230 aa): MFAAIQPGLAEGAQYPGSLPPGVCQPDLQPDNNSNFVESAKDANKNWHGVPGKVDPILIRSSSESPSDNQ VFQATRLPEAGVRSPPEGAEIPGAEPEKLSGASSVCSPLEDIGYASSSLSIDSFSSSPEPVCDTPRGPSP LDPLLPSVAQAVQQLQAQERYKEQEKEKHHAHLVMYRRLALLQWIRALQHQLVDQQARLQESFDTILDNR KELIRCLQQREAPCRHQDQG
|