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Report for CCDS23620.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
23620.1 |
Public |
Mus musculus |
9 |
Csrnp1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:215418](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:23620.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:215418](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 23620.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000035101.8 |
ENSMUSP00000035101.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000035101.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000035101.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000035101](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000035101](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000215916.1 |
ENSMUSP00000149214.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000215916.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000149214.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000215916](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000149214](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000214058.1 |
ENSMUSP00000150628.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000214058.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000150628.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000214058](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000150628](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001357560.1 |
NP_001344489.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001357560.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001344489.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001357560](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001344489](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001344489.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001357561.1 |
NP_001344490.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001357561.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001344490.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001357561](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001344490](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001344490.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001357562.1 |
NP_001344491.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001357562.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001344491.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001357562](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001344491](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001344491.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_153287.4 |
NP_695019.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_153287.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_695019.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_153287](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_695019](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_695019.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 23620.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1752 nt): ATGACTGGGCTACTGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTCCAGTTCCTCCTCCTCCTCAT CGTTCTCTAGCCGGCTCTCTCTCTCCTCCTTCCCCGCCTCTTCTGCCTCCCCTGCCTGGAACTCTGATGA GGAGGGACCAGGTGGTCAGGCACCCCAGTCTGATCAGGACTCCTGTGGCCTCCAGAGTTTCACTCCCCCG TCCATCCTGAAGCGGGCTCCTCGGGAGCGTCCAGGTCACGTGGCCTTTAACGGCATCACCGTCTACTATT TCCCACGGTGCCAGGGATTCACCAGTGTGCCCAGCCGTGGTGGCTGTACCCTGGGCATGGCTTCTCGGCA CAGCACCTGCCGCCTTTTCTCCTTAGCTGAGTTTACACAGGAGCAGGTCCGGGCTCGGCGTGAGAAGCTC CGCCGCCGTTTAAAGGAGGAGAAGCTGGAGATGCTGAGGTGGAAGTTTTCAGTGGCTGGAGTTCCGGAGT CAGGGGCAGGCGTGCCTCTCACAGCGGATGCCATCGATGACGCCTCTGTAGAGGAGGACTTGGCAGTGGC CGTGGCAAATGGCCGCCTGGAGGAAGCCAATTTCCTCCAGCCCCATCCACCTCGGCAGCGACGGGCTCTC CTTCGGGCTTCCGGCGTTCGAAGGATTGACCGAGAGGAGAAGCGGGAGCTGCAGGTGCTGCGCCAGTCCC GGGAGGATTGTGGTTGTCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCAGCTTGGCCGGCAT TAAGTGCCAGATGGATCACACGTCCTTCCCCTGTGGCTGCTGCAGGGAGGGCTGCGAGAACCCCAATGGT CGAGTGGAATTCAATCAGACAAGAGTTCAGACGCACTTCATTCACACCCTCACCCGCCTGCAGATGGAGC AGGGTGCCGAGAGCTTGGGGGACCTGGAGTCCCCCGTGGAGGACACTCCTGTTGAACAAGCCGCGCTTTC CCCCTTTCCGCCTTCCAAGCCCCCTGTGAGCAGTGAACTGGGGGACAGCAGTTGCAGCAGCGATATGACA GACTCTTCCACGACCTTGTCCTCTGGCAGCAGCGAGCCTCCAAACCACCCTGCCCACCCCAGCCTGCCAG GTCCCAGCTTCCGGTCTGGCGTAGATGAAGACAGCCTGGAACAGATCCTGAATTTCAGTGACTCTGACCT CGGAATTGAGGAGGAGGAGGAGGAGGGAGGGGGTGTGGGCAACTTGGATAACCTCAGCTGCTTCCATCTG GCTGACATCTTTGGTACCGGTGACCCCGGCAGCCTGGCCAGCTGGACTCACAGCCAGTCTGGCTCTAGCC TCGCATCGGGCATCCTAGATGAGAATGCCAACCTGGACGCCAGTTGCTTCCTGAACAGCGGACTTGGAGG GCTGAGAGAAGGTAGCCTCCCTGGCAGTTCTGGGTCCCCTGAGGGGGACGCCGTCCAGAGCAGCTCCTGG GACCTCAGCTTATCCTCCTGTGACTCCTTTGAGCTTCTCCAGGCTCTGCCAGATTATAGTCTGGGACCTC ACTATACTTCCCGAAGGGTGTCGGGCAGCCCGGATAGCCTTGAGACCTTCCACCCATTGCCCAGCTTCTC TCCACCACGGGATGCGAGCACTTGCTTCCTGGAGTCTCTCGTGGGCCTGTCTGAGCCGGTTACAGAAGTC CTGGCACCCCTTCTGGAGAGCCAGTTTGAGGATGCTGCCTTGGCACCTTTGTTGGAGCCTGTGCCAGTGT AA
Translation (583 aa): MTGLLKRKFDQLEEDDSSSSSSSSFSSRLSLSSFPASSASPAWNSDEEGPGGQAPQSDQDSCGLQSFTPP SILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTLGMASRHSTCRLFSLAEFTQEQVRARREKL RRRLKEEKLEMLRWKFSVAGVPESGAGVPLTADAIDDASVEEDLAVAVANGRLEEANFLQPHPPRQRRAL LRASGVRRIDREEKRELQVLRQSREDCGCHCDGVCDPETCSCSLAGIKCQMDHTSFPCGCCREGCENPNG RVEFNQTRVQTHFIHTLTRLQMEQGAESLGDLESPVEDTPVEQAALSPFPPSKPPVSSELGDSSCSSDMT DSSTTLSSGSSEPPNHPAHPSLPGPSFRSGVDEDSLEQILNFSDSDLGIEEEEEEGGGVGNLDNLSCFHL ADIFGTGDPGSLASWTHSQSGSSLASGILDENANLDASCFLNSGLGGLREGSLPGSSGSPEGDAVQSSSW DLSLSSCDSFELLQALPDYSLGPHYTSRRVSGSPDSLETFHPLPSFSPPRDASTCFLESLVGLSEPVTEV LAPLLESQFEDAALAPLLEPVPV
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