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Report for CCDS25160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25160.1 Public Mus musculus 11 Pex12 23 108 98 CCDS HistoryNCBI Gene:103737Re-query CCDS DB by CCDS ID:25160.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018877.8 ENSMUSP00000018877.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018877.8Link to Ensembl Protein Viewer:ENSMUSP00000018877.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018877Re-query CCDS DB by Protein ID:ENSMUSP00000018877
Original member Current member EBI ENSMUST00000108146.7 ENSMUSP00000103781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108146.7Link to Ensembl Protein Viewer:ENSMUSP00000103781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108146Re-query CCDS DB by Protein ID:ENSMUSP00000103781
Original member Current member EBI ENSMUST00000175741.7 ENSMUSP00000135145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175741.7Link to Ensembl Protein Viewer:ENSMUSP00000135145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175741Re-query CCDS DB by Protein ID:ENSMUSP00000135145
Original member Current member EBI ENSMUST00000176518.1 ENSMUSP00000135632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176518.1Link to Ensembl Protein Viewer:ENSMUSP00000135632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176518Re-query CCDS DB by Protein ID:ENSMUSP00000135632
Original member Current member NCBI NM_001364762.1 NP_001351691.1 Accepted alive Link to Nucleotide Sequence:NM_001364762.1Link to Protein Sequence:NP_001351691.1Re-query CCDS DB by Nucleotide ID:NM_001364762Re-query CCDS DB by Protein ID:NP_001351691Link to BLAST:NP_001351691.1
Original member Current member NCBI NM_001364763.1 NP_001351692.1 Accepted alive Link to Nucleotide Sequence:NM_001364763.1Link to Protein Sequence:NP_001351692.1Re-query CCDS DB by Nucleotide ID:NM_001364763Re-query CCDS DB by Protein ID:NP_001351692Link to BLAST:NP_001351692.1
Original member Current member NCBI NM_134025.4 NP_598786.1 Accepted alive Link to Nucleotide Sequence:NM_134025.4Link to Protein Sequence:NP_598786.1Re-query CCDS DB by Nucleotide ID:NM_134025Re-query CCDS DB by Protein ID:NP_598786Link to BLAST:NP_598786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351691.1 359 Q8VC48 359 100% 0 0
NP_001351692.1 359 Q8VC48 359 100% 0 0
NP_598786.1 359 Q8VC48 359 100% 0 0

Chromosomal Locations for CCDS 25160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83296041 83296440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83297488 83298041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83298316 83298441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGCTGAGTATGGGGCTCACATCACAACTGCTTCAGTGGCGGACGACCAGCCATCCATCTTTGAGGTGG
TA
GCACAGGACAGTTTAATGACAGCAGTGAGACCCGCTCTTCAGCATGTGGTCAAGGTTCTTGCAGAATC
A
AATCCTGCGCACTATGGCTTCCTCTGGCGGTGGTTTGATGAAATCTTCACTCTGCTAGACTTCCTGCTC
CAG
CAGCATTATCTTTCTAGAACTAGTGCCTCATTTTCTGAACACTTTTATGGCTTAAAGCGGATTGTGG
CA
GGGAGCTCGCCGCATCTTCAGAGACCGGCCAGTGCTGGTCTTCCCAAGGAACACCTCTGGAAATCTGC
C
ATGTTCCTTGTCCTTCTTCCCTATCTGAAAGTGAAGCTAGAGAAGCTGGCTTCTAGCTTGAGAGAAGAA
GAC
GAATACTCTATTCACCCCCCTTCTTCTCGCTGGAAACGATTCTACAGAGCCTTTCTGGCGGCCTACC
CT
TTTGTTAACATGGCCTGGGAAGGCTGGTTTCTTACACAACAACTGCGTTACATCTTGGGGAAAGCTGA
G
CATCACTCTCCCCTGCTGAAACTGGCTGGAGTTCGGTTAGCTCGACTGACAGCTCAGGACATGCAAGCT
ATC
AAACAGAGACTGGTTGAAGCCAGTGCAATGCAGGAGCCCGTCAGAAGCGTTGGTGAGAAGATAAAGT
CA
GCTCTGAAGAAAGCTGTGGGAGGTGTTGCCTTATCCCTCTCGACTGGCCTCTCTGTGGGTGTATTCTT
C
CTGCAGTTTCTTGACTGGTGGTACTCTTCTGAGAACCAAGAAGCCATCAAATCACTGACTGCCCTGCCC
ACT
CCACCACCACCTGTACACCTAGACTACAACTCTGATTCTCCCCTCTTACCCAAAATGAAAACAGTGT
GC
CCACTCTGTCGTAAAACTCGAGTGAATGATACGGTTCTTGCCACCTCTGGCTATGTATTCTGTTACCG
C
TGTGTGTTTAATTATGTGAGGAGTCACCAAGCCTGTCCCATTACAGGGTATCCAACAGAAGTCCAGCAT
CTA
ATTAAACTCTACTCTCCAGAGAACTGA


Translation (359 aa):
MAEYGAHITTASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFLWRWFDEIFTLLDFLL
Q
QHYLSRTSASFSEHFYGLKRIVAGSSPHLQRPASAGLPKEHLWKSAMFLVLLPYLKVKLEKLASSLREE
D
EYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLARLTAQDMQA
I
KQRLVEASAMQEPVR
SVGEKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQEAIKSLTALP
T
PPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFNYVRSHQACPITGYPTEVQH
L
IKLYSPEN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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