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Report for CCDS29122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29122.1 Public Mus musculus 18 Camk4 23 108 98 CCDS HistoryNCBI Gene:12326Re-query CCDS DB by CCDS ID:29122.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042868.5 ENSMUSP00000046539.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042868.5Link to Ensembl Protein Viewer:ENSMUSP00000046539.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042868Re-query CCDS DB by Protein ID:ENSMUSP00000046539
Original member Current member EBI ENSMUST00000234205.1 ENSMUSP00000157012.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234205.1Link to Ensembl Protein Viewer:ENSMUSP00000157012.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234205Re-query CCDS DB by Protein ID:ENSMUSP00000157012
Original member Current member EBI ENSMUST00000234654.1 ENSMUSP00000157216.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234654.1Link to Ensembl Protein Viewer:ENSMUSP00000157216.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234654Re-query CCDS DB by Protein ID:ENSMUSP00000157216
Original member Current member NCBI NM_009793.3 NP_033923.2 Accepted alive Link to Nucleotide Sequence:NM_009793.3Link to Protein Sequence:NP_033923.2Re-query CCDS DB by Nucleotide ID:NM_009793Re-query CCDS DB by Protein ID:NP_033923Link to BLAST:NP_033923.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033923.2 469 P08414 469 99.7868% 0 1

Chromosomal Locations for CCDS 29122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32939396 32939544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33077993 33078071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33107880 33107942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33109765 33109847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33129761 33129833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33156749 33156839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33158827 33158901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33176159 33176234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33179498 33179624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33182238 33182390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33184761 33185201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGCTCAAAGTCACGGTGCCCTCCTGTCCCTCCTCGCCCTGCTCCTCGGTCACCGCCAGTACTGAGAACC
TCGTCCCGGATTACTGGATCGACGGCTCTAACCGAGATCCTCTGGGCGATTTCTTCGAGGTGGAGTCAGA
GCTGGGACGGGGTGCTACATCCATTGTGTACAGATGCAAACAGAAGGGGACCCAGAAGCCCTATGCTCTC
AAAGTGTTAAAGAAAACAGTGGACAAGAAGATTGTGAGAACAGAAATAGGAGTTCTCCTGCGTCTCTCAC
ACCCGAACATCATAAAACTCAAGGAAATATTCGAAACCCCCACAGAAATCAGCCTGGTCCTTGAGCTGGT
CACAGGAGGAGAACTGTTTGACAGGATTGTGGAGAAGGGATACTACAGTGAGCGCGATGCGGCTGACGCG
GTGAAGCAGATCCTGGAGGCCGTTGCTTACCTGCATGAAAATGGGATTGTCCATCGTGACCTCAAACCAG
AGAATCTTCTTTATGCAACTCCAGCCCCTGATGCACCCCTCAAAATTGCTGATTTTGGACTTTCAAAAAT
TGTGGAACATCAAGTGCTCATGAAGACAGTGTGTGGAACCCCGGGGTACTGCGCACCTGAGATTCTCCGA
GGCTGTGCCTACGGACCTGAGGTGGACATGTGGTCTGTAGGAATAATCACCTACATCCTACTTTGTGGAT
TTGAACCATTCTATGACGAGCGAGGTGATCAGTTCATGTTCAGGAGAATTCTGAATTGTGAATATTACTT
TATCTCCCCCTGGTGGGATGAAGTGTCTTTAAATGCCAAGGACTTGGTCAAAAAGCTCATTGTTTTGGAT
CCCAAGAAACGGCTGACTACATTTCAAGCCCTCCAACACCCATGGGTCACAGGTAAAGCGGCCAACTTTG
TTCACATGGACACTGCTCAGAAGAAACTTCAAGAATTCAATGCTCGGCGCAAGCTTAAGGCAGCGGTGAA
GGCTGTGGTGGCCTCTTCTCGGCTGGGAAGTGCCAGCAGTAGCCACACCAGCATCCAAGAGAACCACAAG
GCCAGCTCGGATCCACCTTCAACCCAAGATGCCAAGGACAGCACAGATCTTCTGGGAAAGAAAATGCAAG
AGGAGGACCAAGAGGAGGACCAAGTGGAGGCCGAGGCTTCAGCCGATGAGATGAGGAAGCTGCAGTCCGA
GGAGGTGGAGAAAGATGCAGGTGTAAAAGAGGAGGAGACCTCCAGTATGGTGCCTCAGGATCCAGAGGAT
GAGCTGGAAACAGATGACCCAGAGATGAAGAGGGATTCAGAGGAGAAGCTGAAGAGTGTGGAGGAAGAAA
TGGACCCCATGACTGAGGAGGAAGCCCCTGACGCGGGACTTGGGGTTCCACAGCAGGATGCGATTCAGCC
AGAGTACTAA

Translation (469 aa):
MLKVTVPSCPSSPCSSVTASTENLVPDYWIDGSNRDPLGDFFEVESELGRGATSIVYRCKQKGTQKPYAL
KVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADA
VKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILR
GCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVKKLIVLD
PKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVASSRLGSASSSHTSIQENHK
ASSDPPSTQDAKDSTDLLGKKMQEEDQEEDQVEAEASADEMRKLQSEEVEKDAGVKEEETSSMVPQDPED
ELETDDPEMKRDSEEKLKSVEEEMDPMTEEEAPDAGLGVPQQDAIQPEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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