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Report for CCDS35627.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
35627.1 |
Public |
Mus musculus |
1 |
Epha4 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:13838](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:35627.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 1 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Nonsense-mediated decay (NMD) candidate |
Sequence IDs included in CCDS 35627.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000027451.12 |
ENSMUSP00000027451.6 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000027451.12](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000027451.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000027451](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000027451](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000188952.6 |
ENSMUSP00000139640.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000188952.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000139640.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000188952](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000139640](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000188797.6 |
ENSMUSP00000140954.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000188797.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000140954.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000188797](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000140954](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_007936.3 |
NP_031962.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_007936.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_031962.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_007936](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_031962](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_031962.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_031962.2 |
986 |
Q03137-1 |
986 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 35627.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2961 nt): ATGGCTGGGATTTTCTATTTCATCCTCTTTTCGTTTCTCTTTGGAATTTGCGACGCTGTCACCGGTTCTA GGGTATACCCCGCGAATGAAGTTACTTTATTGGATTCCAGATCTGTTCAGGGAGAGCTTGGGTGGATAGC AAGCCCTCTGGAAGGAGGGTGGGAGGAAGTGAGCATTATGGATGAGAAAAATACACCGATCCGAACCTAC CAGGTGTGCAACGTGATGGAAGCCAGCCAGAACAACTGGCTGCGAACTGACTGGATCACCCGCGAAGGGG CGCAGAGGGTGTACATTGAAATTAAGTTCACTCTAAGGGACTGCAACAGTCTTCCGGGCGTCATGGGGAC TTGCAAGGAGACGTTTAACCTCTACTACTATGAGTCGGACAACGACAAGGAGCGCTTCATCAGAGAGAGC CAGTTTGGCAAGATCGACACCATCGCAGCTGATGAGAGCTTCACGCAGGTGGACATTGGTGACCGAATCA TGAAACTCAACACTGAGATCCGGGATGTAGGGCCACTGAGCAAGAAAGGGTTTTACCTGGCTTTTCAGGA TGTGGGTGCTTGCATCGCCCTGGTGTCTGTCCGTGTGTTCTACAAGAAGTGTCCACTCACCGTTCGAAAT CTAGCCCAGTTTCCTGATACCATTACTGGGGCTGATACCTCTTCCCTGGTGGAAGTTCGAGGCTCCTGTG TCAACAACTCAGAAGAGAAGGATGTGCCAAAAATGTACTGTGGGGCAGATGGTGAATGGCTGGTACCCAT TGGCAACTGCCTATGCAACGCTGGGCACGAGGAGCAGAATGGTGAATGCCAAGCTTGCAAAATTGGATAT TACAAAGCTCTTTCCACGGACGCCTCCTGTGCCAAGTGTCCACCGCACAGCTACTCTGTCTGGGAAGGAG CCACGTCCTGCACCTGTGACCGAGGCTTTTTCAGAGCTGACAACGATGCAGCCTCCATGCCCTGCACCCG CCCACCATCTGCTCCCCTCAACTTGATTTCTAATGTCAACGAGACATCGGTGAACTTGGAATGGAGCAGC CCTCAGAACACAGGTGGCCGTCAGGACATTTCTTACAACGTGGTCTGCAAGAAATGTGGAGCTGGTGATC CCAGCAAGTGCCGGCCCTGTGGAAGTGGAGTCCACTACACACCACAGCAGAACGGACTCAAGACGACCAG AGTCTCCATCACTGACCTCCTAGCACACACCAATTACACGTTTGAGATCTGGGCAGTGAATGGAGTGTCT AAGTATAACCCTAGCCCGGACCAGTCCGTGTCTGTCACAGTGACAACCAACCAAGCAGCACCATCATCCA TTGCTTTGGTCCAGGCTAAAGAAGTTACAAGATATAGCGTAGCTCTGGCTTGGCTGGAACCAGATCGACC AAATGGAGTCATCTTAGAATATGAAGTCAAATATTATGAAAAGGATCAGAATGAACGCAGCTATCGCATA GTCCGGACAGCTGCCAGGAACACAGATATCAAAGGCCTGAACCCTCTGACTTCCTATGTTTTTCACGTGC GAGCCAGGACCGCTGCTGGCTACGGAGACTTCAGCGAGCCCCTGGAAGTCACTACTAATACAGTGCCTTC CCGCATCATTGGCGATGGAGCCAACTCCACTGTCCTGCTGGTCTCCGTCTCTGGCAGTGTGGTCCTCGTG GTCATTCTCATTGCAGCTTTTGTGATCAGCCGAAGACGGAGTAAGTACAGCAAAGCGAAACAAGAAGCAG ATGAAGAGAAACATTTGAATCAAGGTGTTAGAACTTATGTGGATCCCTTTACATACGAAGACCCCAACCA GGCAGTTCGAGAATTTGCCAAAGAAATCGATGCATCCTGCATTAAAATTGAAAAGGTCATAGGAGTTGGT GAATTTGGAGAGGTCTGCAGTGGGCGTCTCAAAGTGCCCGGCAAGAGAGAGATCTGTGTGGCCATCAAGA CTCTGAAAGCTGGCTATACTGACAAGCAGAGGAGAGACTTCCTGAGTGAGGCCAGCATCATGGGACAGTT TGACCACCCAAACATAATCCACCTGGAAGGCGTTGTCACCAAATGTAAACCGGTAATGATCATAACGGAG TACATGGAGAACGGCTCCTTGGATGCTTTCCTCAGGAAGAATGATGGCCGCTTTACAGTCATTCAGCTGG TGGGCATGCTCCGGGGCATTGGCTCGGGGATGAAGTACTTATCTGATATGAGCTATGTGCATCGAGACCT GGCTGCCAGGAACATCCTGGTAAACAGCAACTTGGTCTGCAAGGTGTCTGACTTTGGCATGTCCAGGGTG CTGGAGGATGACCCCGAAGCAGCCTACACTACCAGGGGTGGCAAGATTCCTATCCGGTGGACTGCGCCAG AAGCAATTGCGTATCGTAAATTTACCTCAGCCAGTGATGTCTGGAGCTACGGAATCGTTATGTGGGAAGT GATGTCATATGGAGAGAGACCGTACTGGGATATGTCCAATCAAGATGTGATCAAAGCCATCGAGGAAGGG TACCGGCTACCCCCTCCAATGGACTGCCCCATTGCCCTCCATCAGTTAATGCTGGACTGCTGGCAGAAAG AGAGAAGTGACAGGCCTAAATTTGGGCAGATCGTCAACATGCTGGACAAACTCATCCGCAATCCCAACAG CCTGAAGAGGACAGGGTCGGAGAGTTCCAGACCAAACACAGCCTTGTTAGATCCCAGCTCCCCTGAATTC TCTGCTGTAGTATCAGTGGGCGACTGGCTGCAGGCCATCAAAATGGACCGGTATAAGGACAACTTCACGG CCGCCGGGTACACGACACTAGAAGCCGTGGTTCACATGAGCCAGGACGACCTGGCGAGAATTGGCATCAC CGCCATCACGCACCAGAATAAGATTTTGAGCAGCGTCCAGGCGATGCGAACCCAGATGCAGCAGATGCAT GGCAGGATGGTTCCTGTCTGA
Translation (986 aa): MAGIFYFILFSFLFGICDAVTGSRVYPANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTY QVCNVMEASQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRES QFGKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRN LAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEEQNGECQACKIGY YKALSTDASCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSS PQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTRVSITDLLAHTNYTFEIWAVNGVS KYNPSPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRI VRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGDGANSTVLLVSVSGSVVLV VILIAAFVISRRRSKYSKAKQEADEEKHLNQGVRTYVDPFTYEDPNQAVREFAKEIDASCIKIEKVIGVG EFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITE YMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRV LEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEG YRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKLIRNPNSLKRTGSESSRPNTALLDPSSPEF SAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMH GRMVPV
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