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Report for CCDS52232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52232.1 Public Mus musculus 7 Garin5a 23 108 98 CCDS HistoryNCBI Gene:75538Re-query CCDS DB by CCDS ID:52232.1Re-query CCDS DB by GeneID:75538See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107927.4 ENSMUSP00000103560.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107927.4Link to Ensembl Protein Viewer:ENSMUSP00000103560.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107927Re-query CCDS DB by Protein ID:ENSMUSP00000103560
Original member Current member NCBI NM_028169.2 NP_082445.1 Accepted alive Link to Nucleotide Sequence:NM_028169.2Link to Protein Sequence:NP_082445.1Re-query CCDS DB by Nucleotide ID:NM_028169Re-query CCDS DB by Protein ID:NP_082445Link to BLAST:NP_082445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082445.1 212 A1L3C1-1 212 100% 0 0

Chromosomal Locations for CCDS 52232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 44496688 44496730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44496915 44497033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44497503 44497633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44500150 44500438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 44500968 44501024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGAAGGGCGGTCGAGATCTTAAGGCCGCTCGGGGCGGAGCAGACCGCCCCCTGGCTCCAGCCTACGCCC
CGTGCCGCCCTGGGCGCCTCCAACGCCACCTCCTGAGCGGCGAGTTCGACCAGCTGCGCGACTTTCCCAT
CTTTGAAAGCAACTTCGTGCAGGTGACCCGGTTTGGAGAAGTCGCCAACAAGGTCACCATGGGGGTGGCA
GCCTCTAGTCCTGCCCTGGAGCTGCCAGACCTGCTGCTGCTGGCCGGCCCTGACAAGGAGAATGGACACC
TGCAGCTCCTCGGGCTGTTTCCCTTGCAATTTGTGCAGTTGTTTGTGCATGATGAGAGCCGCCAGCAGCT
CAAGGTCAAGTTCCGAACTGGCCGCGCCTTCTACTTGCAACTGCGCTCTCCTCCAGAGACCCGCGACTGC
GAGTTTGGCCGCTGGGTGCGGCTGCTCTACCGCCTGCGATTCCACTCGCCCACCTGCGCAGTGCCCTTCA
CGCACGAGGACACTGCGCCTGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTCAAGGA
GGGGCAGTTGCAACCCCCGGAGTTTCAAGCCACAGAGGCCAGACTCGACCCGCAGGTCTCAGAACTCTGG
GGGCTCTGA

Translation (212 aa):
MKGGRDLKAARGGADRPLAPAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVA
ASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDESRQQLKVKFRTGRAFYLQLRSPPETRDC
EFGRWVRLLYRLRFHSPTCAVPFTHEDTAPEEEEEEEEEEEEEEVKEGQLQPPEFQATEARLDPQVSELW
GL


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