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![](/corehtml/transparent.gif) |
Report for CCDS24423.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
24423.1 |
Public |
Mus musculus |
11 |
Tbrg4 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:21379](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:24423.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 11 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Nonsense-mediated decay (NMD) candidate |
Sequence IDs included in CCDS 24423.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000000394.13 |
ENSMUSP00000000394.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000000394.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000000394.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000000394](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000000394](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000156969.7 |
ENSMUSP00000114256.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000156969.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000114256.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000156969](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000114256](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000189268.6 |
ENSMUSP00000140835.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000189268.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000140835.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000189268](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000140835](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001130457.2 |
NP_001123929.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001130457.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001123929.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001130457](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001123929](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001123929.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362713.1 |
NP_001349642.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362713.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349642.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362713](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349642](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349642.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362714.1 |
NP_001349643.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362714.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349643.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362714](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349643](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349643.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_134011.3 |
NP_598772.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_134011.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_598772.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_134011](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_598772](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_598772.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 24423.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1893 nt): ATGGCCGTTCGCCTGATGAAGCGGTGTACCTGCCTGCTTCGAGAGGCTACCCGCCTAGTTCCTACTGTTG CCCCAGTTGGCCGACTGAGACTTGCTGGAGTGTCCTGCAAGACTTTGACGTCCTCTGTCAGTTCCCCCTC CTCGGGCTCCTTGGCGGAGCTGTTGGGGAAAGAGCAGGTGTTTACTCCGTACCCAGAGCACCAAGAGCTG GACTTCCTCATTGAGAAAGCCTCCAGACCAGAGCAGCTGCTGGAGCTGCTGGGTTCTGACCATAGCCTGC ACCACAATCACGCGGCCCTCATCCTCATCCGCCTGTCCTACCTGCTGTCTGAGAAGCCAAAGGAAAAGGC CTTGCTTGCAGAGGATGCTCGCTTTCAGCGACTTGTCAAGCTAGTTGATAGTCAGATAACTTGTGTCTGG CATGGGACCCTCGTGAAGCTGCTGCGGAGCCTGTACACACTAGTGCTCCCTCAGATCTCCAAGGAGCTGC AGTCAGTGGAGCAGGAAGTGCGCTGGCGTCTGCGGAGGCTCAAGTACAAGCACTTGGTCTTCCTGGCTGA GTCCTGTGCCTCCTTCATGAAGGAGCAACACTCGCAGGAACTGCTGGCCGAGCTGCTAATGCACCTGGAG AGGCGCTGGACAGAGATCAACGACAGCCGTACATTGGTGACCATGATGACAATGGCAGGGCACCTCTCAG AGTCACTCATGAACCACCTGGAAGACAAGTGCCTGGAGCTGGTGGAGCAGTTTGGCCCTGATGAGCTGCG GAAGGTGCTAGTGACGCTGGCAGCACAGAGCCGGCGGTCGGTGCCCTTGCTGCGGGCCATCTCCTACCAC CTGGTACAGAAGCCCTTCCCGATGACAAAAGGCATGCTCCTGGACCTGGCCTACGCCTATGGGAAGCTCA GTTTCCACCAAACCCAAGTGTCCCAGCGCCTGGCTGCTGACCTCCTGCCCTTCATTCCCAGCATGACGCC TGGAGAGGTGGCCCGCTGCGCCAAGTCCTTTGCCTTCCTCAAGTGGCTCAACCTGCCTTTGTTTGAAGCC TTTACTCAGCACCTCCTCAGCAGAGTGCAGGATGTCTCCCTGTCCCATGTGTGCAGCGTTCTTCTTGCCT TTGCCCGACTGAACTTTCATCCTGAACAAGAAGAGGATCAGTTCTTCAGCATGGTGCATGAGAAGCTGGA CCCCGTGCTGGGGAGCCTGGAGCCGGCCCTGCAGGTGGACCTGGTGTGGGCGCTGTGCGTGCTGCAGCAC GTGCACGAGACAGAGCTGCACACGGTTCTCCATCCTGGACTCCACGCTCGGTTTCTAGAGAGCAAGTCTC CAAAGGACCAGAGTACCTTCCAGAAATTGGTCCACATCAACACCACCGCCCTGCTGGAGCACCCTGAATA TAAAGGCCCTTTCCTGCCAGCCTCAGCTGTAGCCCCCATCCCCTCACCCTCTAATAAAAAGATGACACCC CTACAGAAGGAGCTGCAGGAGACACTGAAGGCACTGCTGGGGAACACTGACAAGGGCAGCCTGGAGGTGG CCACACAGTATGGCTGGGTGCTGGATGCAGAGGTGCTCCTGGATGCCGACGGCCACTTCCTGCCCCTAAG AAACTTCGTTGCTCCCCACCTTGCCCAGCCAGTGGGGAACCAGCCATTGCCCCCAGGAGCTAAAAGGATC GCTTTCCTGCGCTGGGAGTTCCCCAACTTCAACAGCAGAAGCAAGGACTTGTTGGGCCGTTTTGTCCTGG CCCGTCGACATGTGCTGGCTGCAGGCTTCCTGGTAGTAGATGTCCCATATTATGAATGGCTGGATCTGAA GTCTGAATGGCAGAAAAGCGCCTACCTCAAGGACAAGATGCGAAAAGCAATGGCTGAGGAGCTAGCCAAA TGA
Translation (630 aa): MAVRLMKRCTCLLREATRLVPTVAPVGRLRLAGVSCKTLTSSVSSPSSGSLAELLGKEQVFTPYPEHQEL DFLIEKASRPEQLLELLGSDHSLHHNHAALILIRLSYLLSEKPKEKALLAEDARFQRLVKLVDSQITCVW HGTLVKLLRSLYTLVLPQISKELQSVEQEVRWRLRRLKYKHLVFLAESCASFMKEQHSQELLAELLMHLE RRWTEINDSRTLVTMMTMAGHLSESLMNHLEDKCLELVEQFGPDELRKVLVTLAAQSRRSVPLLRAISYH LVQKPFPMTKGMLLDLAYAYGKLSFHQTQVSQRLAADLLPFIPSMTPGEVARCAKSFAFLKWLNLPLFEA FTQHLLSRVQDVSLSHVCSVLLAFARLNFHPEQEEDQFFSMVHEKLDPVLGSLEPALQVDLVWALCVLQH VHETELHTVLHPGLHARFLESKSPKDQSTFQKLVHINTTALLEHPEYKGPFLPASAVAPIPSPSNKKMTP LQKELQETLKALLGNTDKGSLEVATQYGWVLDAEVLLDADGHFLPLRNFVAPHLAQPVGNQPLPPGAKRI AFLRWEFPNFNSRSKDLLGRFVLARRHVLAAGFLVVDVPYYEWLDLKSEWQKSAYLKDKMRKAMAEELAK
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