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Report for CCDS25164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25164.1 Public Mus musculus 11 Gas2l2 23 108 98 CCDS HistoryNCBI Gene:237891Re-query CCDS DB by CCDS ID:25164.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052521.8 ENSMUSP00000051907.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052521.8Link to Ensembl Protein Viewer:ENSMUSP00000051907.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052521Re-query CCDS DB by Protein ID:ENSMUSP00000051907
Original member Current member NCBI NM_001013759.2 NP_001013781.1 Accepted alive Link to Nucleotide Sequence:NM_001013759.2Link to Protein Sequence:NP_001013781.1Re-query CCDS DB by Nucleotide ID:NM_001013759Re-query CCDS DB by Protein ID:NP_001013781Link to BLAST:NP_001013781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013781.1 860 Q5SSG4 860 100% 0 0

Chromosomal Locations for CCDS 25164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83421902 83423402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83424244 83424493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83425060 83425156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83426216 83426323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83427255 83427496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83429044 83429428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGTCTCAGCATGTGGGACATGGGAGGAGACCCAGGACCCCAGGACCTCCTGTGCGCAGCATCCGGCCCT
TC
AAGTCCAGCGAGCAGTACCTGGAGGCCATGAAGGAAGACCTGGCTGAGTGGCTTCGGGATCTGTACGG
G
CTGGACATCGATGCAGACAACTTCCTGCGGGTGCTGGAGACTGGCCTGGTGTTGTGCCGGCATGCCAAC
ACT
GTCACGGAGGCTGCTCTGGCCTTCCTGGCTGAGGCACCTGAGCGAGCTCAAAAGATTCCCATGCCCC
AG
GCTGGAGTTTTCTGCAATGGGGCTGCTCAGCCGGGTACCTTCCAGGCCAGGGACAACATCTCCAACTT
C
ATCCAGTGGTGTCGCAAGGAGATGGGGATCCAAGAGGTGCTGATGTTCGAGACAGAGGACCTAGTGCTC
CGC
AAGAACGTGAAGAGCGTGGTACTGTGTCTGCTGGAGCTGGGTCGCCGCGCTTGGCGCTTCGGTGTGG
CG
GCGCCCGCCCTGGTGCATCTGGAAGAGGAAATTGATGAGGAGCTGCGGCGCGACCTGGCCTTGCCATC
G
CCCGACCCACCACCGCCCATACCCCCTGCCCGCAGGCCTTGCCACTTCCACAACCTGGACCAGATGGTG
CAG
AGCCTCGTCAGCCATTGCACATGCCCAGTGCAATTCTCCATGGTCAAGATATCTGAGGGGAAGTACA
GA
GTGGGGGACTCCAACACTCTCATCTTCATCCGGATCCTCCGGAGCCACGTGATGGTGCGTGTTGGGGG
T
GGCTGGGACACGCTGGGCCATTATCTGGATAAACATGACCCCTGCCGGTGCACGTCCCTCTCCCACAAG
CCA
GGCAGCTTCCTGAAGCCCCCAGGACCACCGGTGCAGCACGAAGTGAAGGTGCAGGATGGGCCCTCAC
AA
CCCCAGCCTACAATGACCATCAGCCGCTCACAGAGCCCACTGCCTCCAGTGGACTGGAAGACATACAC
C
TCTTCCAGCCGAAAGCTGAGACCTCCCACACCTTCCTCTCCTGGACTCCGTAGTGAACCCCCAGTGAGG
GCC
AGAACCCTCAGAGAGGATCCACTCCCAAGGTCCCAAGAGAAACCAACTCCATCTCAGAGGATGTCAT
CA
CCTGGTCCCCAATTCTCATCTACTTGTAGGGGGCCAGACCTACAGAGTACCCTGTCTGGGAAGAGAGC
A
AACAGATGCCCAGGTGAACCGCCCAGAGGAAGGACTCCCACATTGTGGGTTCACAAGGAAGCAGGCAGT
CGA
GGAACACACACCAAGGCCCCCACACCACAGAGGCTCCAAATCCCTGAGGCCACCAGCAAAAGGACGT
CA
GCAAGGGGACCATCGCCCCCACCTCGTTCCTCCAGCCTAGCCAGTCCTCACATGATCTGGGTCCTGCA
C
CAGGGTGCCTCCCCACAGCTCAGTGAACCCATGACTGTTCATTCCTCATCCCCTGGCAAAGGGCTCACC
AAA
ATCCCTATCCGGTTGTCCCCTGCCCGGCCCCCAACTCCAGGAAGAAGCTCTTTGGGTACTGAAGGTG
AA
TACTCCACGGGGAGAGGCTCCATCTCATCAAGGGCCCTCGAAGGGAACCTGGATAGATCCACACATGG
G
CATCACTCTGTGGAAGCAAGTGGGGACCACCAGACAGACATCCAGACTACTTCAGAGACTGAGGATCCC
AGG
AGCTTGGGTACACAGAAGTGGAAAGAGAGACACACCTCTTTGGCCCTGGGCAGGCGCAGAGAGCAAG
CC
CTCTATGATAACCTTAAAGAGGAGGTTGTGGCCAACATGAAGCTGCTGGAGGTGGGGACTGCCTACAC
T
CAGGGTACAAGGTCTCAAGCCATCCCTCGAAGTGGGGTCTATGTTCCTAGCCTGGGTGGGAGGTGGCCT
GAG
CCTGGGGGTCCTTATGATAAAGTCATCCGGGAACTGGTTCAGGGTCCCCCACCCCTCCTTAAAGTGG
AT
CTGAAAGCCTGGAAGGTTGGATCTGAATGCCTTCCTAGGCCAATTGTGGACCCAGGAAGCCCCAAAGA
G
AAGCTAGGTTCCAGAGAAACGGGGACAAGGATAAAGGCAAGCCTGAATGCTGAGGATACCACAGTGAGG
ACT
GTATCACCTGCAAGAGGGCAGGGGTGCTCAACCCCGCCTGTATCTGCCAACCTGGAGGCTCCCACAC
GT
TCATGCTCAGACCCCAGTTCTGACAAAGCCAGTGTATGTCTGGGCAAGGGCAAGAGAACTCTCCGGAA
G
CCCCAGAAGATCCCATCCATTTACAAGCTGAAGCTGAGACCCAGAATCCGGCCTCGTAGAGACCATAGA
CCT
GAGAAGAGACCTTCCAGAATTCCCAAGCCACTGCCTTACTCCTGCCTGGTTCTAGCCAGGACAGCTC
CT
GGAAGCAGGCTATTAAAAGCTACATTGGGTGGCAAGGGAGGGGTCCCCTGCCAGGTGAATGGAACAGG
T
AAGAAGGAGGAAGAGAAAAAGAAAGGAGGCAGCAACATCTCCTTGGAGAGCAGCATCCAGCCCGCAGAG
AGC
CAGGAGCCTCTGAAGCTTGGTGGAACCCCACTTTCACCCGAGGAGGAATCTTGGGTCTGA


Translation (860 aa):
MSQHVGHGRRPRTPGPPVRSIRPFKSSEQYLEAMKEDLAEWLRDLYGLDIDADNFLRVLETGLVLCRHAN
T
VTEAALAFLAEAPERAQKIPMPQAGVFCNGAAQPGTFQARDNISNFIQWCRKEMGIQ
EVLMFETEDLVL
R
KNVKSVVLCLLELGRRAWRFGVAAPALVHLEEEIDEELRRDLALPSPDPPPPIPPARRPCHFHNLDQM
V
Q
SLVSHCTCPVQFSMVKISEGKYRVGDSNTLIFIR
ILRSHVMVRVGGGWDTLGHYLDKHDPCRCTSLSHK
P
GSFLKPPGPPVQHEVKVQDGPSQPQPTMTISRSQSPLPPVDWKTYTSSSRKLRPPTPSSPGLRSEPPVR
A
RTLREDPLP
RSQEKPTPSQRMSSPGPQFSSTCRGPDLQSTLSGKRANRCPGEPPRGRTPTLWVHKEAGS
R
GTHTKAPTPQRLQIPEATSKRTSARGPSPPPRSSSLASPHMIWVLHQGASPQLSEPMTVHSSSPGKGLT
K
IPIRLSPARPPTPGRSSLGTEGEYSTGRGSISSRALEGNLDRSTHGHHSVEASGDHQTDIQTTSETEDP
R
SLGTQKWKERHTSLALGRRREQALYDNLKEEVVANMKLLEVGTAYTQGTRSQAIPRSGVYVPSLGGRWP
E
PGGPYDKVIRELVQGPPPLLKVDLKAWKVGSECLPRPIVDPGSPKEKLGSRETGTRIKASLNAEDTTVR
T
VSPARGQGCSTPPVSANLEAPTRSCSDPSSDKASVCLGKGKRTLRKPQKIPSIYKLKLRPRIRPRRDHR
P
EKRPSRIPKPLPYSCLVLARTAPGSRLLKATLGGKGGVPCQVNGTGKKEEEKKKGGSNISLESSIQPAE
S
QEPLKLGGTPLSPEEESWV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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