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Report for CCDS50281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50281.1 Public Mus musculus 18 Ccdc112 23 108 98 CCDS HistoryNCBI Gene:240261Re-query CCDS DB by CCDS ID:50281.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072835.6 ENSMUSP00000072614.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072835.6Link to Ensembl Protein Viewer:ENSMUSP00000072614.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072835Re-query CCDS DB by Protein ID:ENSMUSP00000072614
Original member Current member NCBI NM_001160399.1 NP_001153871.1 Accepted alive Link to Nucleotide Sequence:NM_001160399.1Link to Protein Sequence:NP_001153871.1Re-query CCDS DB by Nucleotide ID:NM_001160399Re-query CCDS DB by Protein ID:NP_001153871Link to BLAST:NP_001153871.1

Chromosomal Locations for CCDS 50281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46283256 46283286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46283677 46283795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46285613 46285708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46287350 46287763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46290752 46291142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46291524 46291599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46293404 46293493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46296269 46296390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46299274 46299395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46311694 46311810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCGGCTCTGACTACGGTGGTGGTGGCGGCGGCGGCAACAGCAGTCGCCGGGGCGGTGGCGGGGGCGG
GCGCGGCTGCGGGGACCGGCGTGGGAGCGGCGCCGACGCCGCAACAGAGTGATGGCGGCTGTAGTGCTTC
AGGTGGAATTCGTTCTTTTCAGCTTCAAAACTGGAAACAGAAAGTTAGTCGGACGAAGAAAGCAGAATTC
ATACGTACAGCAGAAAAATTTAAAAACCAAGTTATTGTCATAGAAAAAGATAAACACAGTCATTTCTACA
ACCAAAGAGGCGACTTCAGAACTGAGTATAATATGCTGGAAGAACTGGAAAACAAACTGATCAACAGCAG
GAAGACAGAAAGAGCAAAAATCCAGCAACAGTTGGCCAAGATACATAACAACGTAAAGAAACTTCAGAAC
CAGCTGAAAGATGTGAAGCCCACACCTGATTTTGTCGAGAAGCTCAGAGAAATGATGGAAGAAATTGAAA
ATGCAATCAATACTTTTAAAGAAGAACAGAGACTAATATATGAAGAGCTTATTCAGGAAGAGAAAACAAC
CAATAATGAGCTGAGTGCCGTCTCCAGGAGGATCGAGTCCTGGGCGCTGGGTAATTCGGAAACAGAGAAA
GCTTTCAGAGCCATCTCAAGCAAAGTTCCCGTAGACAGAGTGACACAGAGGACGCTTCCAGAACAAGTGG
TAGAATTTGAAAAATTCCTCCAGCAAACGGGAGGGCGGCAGGGGGGCTGGGATGCCTTGGACCACCAGAA
CTTTGTGAAAGTGAGGAACAAACATAAGGGGAAGCCGACCTTTATGAAGGAGGTTGTAGAACACCTTCCG
GGAAGAACTCTGGATGAAGTTCAGCAACATGAGAAGTGGTACCAAAAATTCCTGACTTTAGAAGAAAAAA
AAAAAGAGTCTATTCAAAATTGGAAAACCAAAAAGCAGCAAAAGAAGGAGGAAATACTCAAGTTAAAAGA
AAAGGTGGACACCGTGCCTCTGCCTTCTCAAAGCAAAGCAGAAGATAGTCCAAAGCAGAGAGAGGAACAG
AGGAAGAAGCAGAAGCTGGCAGTGGAAGCTTGGAAGAAGCGGAAGAGTCTAGAGATGTCAGCGAAGCTTG
CTTCCCAGCTCAGAGAGGAGGAAGAGAAGGAGAGAAAGCAGCAGAGAGAGCGGCAGCGGCAGTCCAAGCT
CAAGCTGCTCCTGGAGAGCTACACCCAGCAGAGGCGGGAGCAGGAAGAGTTCCTGAGGCTTGAGCAGGAG
ATAAAGGAAAAGGCAGAGAAGGCAGAGAAGAGGAAGACTGCTGCGGATGAGCTTGCCAGGTTTCAAGAAA
GAGATTTACATAAACTCGAATTGAAAATTCTAGATAGACAGGCAAAAGAAGAAGAGAAGGCAGAAAAACA
AAGGCGACTGACAAAATTAAAAGAAAAGGTTGAAAATAATGTCAGTAGAGATCCTTCTAGGCTTTACAAA
CCTACCAAAGGCTGGGAAGAACGAACCAAAAAGATAGGTCCGTCAGGCTCTGGGCCACTTCTCCATATCC
CACACAGGGCCATTCCTACCTGGCGACAAGGAATCTAG

Translation (525 aa):
MAALTTVVVAAAATAVAGAVAGAGAAAGTGVGAAPTPQQSDGGCSASGGIRSFQLQNWKQKVSRTKKAEF
IRTAEKFKNQVIVIEKDKHSHFYNQRGDFRTEYNMLEELENKLINSRKTERAKIQQQLAKIHNNVKKLQN
QLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEELIQEEKTTNNELSAVSRRIESWALGNSETEK
AFRAISSKVPVDRVTQRTLPEQVVEFEKFLQQTGGRQGGWDALDHQNFVKVRNKHKGKPTFMKEVVEHLP
GRTLDEVQQHEKWYQKFLTLEEKKKESIQNWKTKKQQKKEEILKLKEKVDTVPLPSQSKAEDSPKQREEQ
RKKQKLAVEAWKKRKSLEMSAKLASQLREEEEKERKQQRERQRQSKLKLLLESYTQQRREQEEFLRLEQE
IKEKAEKAEKRKTAADELARFQERDLHKLELKILDRQAKEEEKAEKQRRLTKLKEKVENNVSRDPSRLYK
PTKGWEERTKKIGPSGSGPLLHIPHRAIPTWRQGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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