NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49736.1 Public Mus musculus 15 Krt78 23 108 98 CCDS HistoryNCBI Gene:332131Re-query CCDS DB by CCDS ID:49736.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164932.2 ENSMUSP00000126197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164932.2Link to Ensembl Protein Viewer:ENSMUSP00000126197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164932Re-query CCDS DB by Protein ID:ENSMUSP00000126197
Original member Current member NCBI NM_212487.4 NP_997652.4 Accepted alive Link to Nucleotide Sequence:NM_212487.4Link to Protein Sequence:NP_997652.4Re-query CCDS DB by Nucleotide ID:NM_212487Re-query CCDS DB by Protein ID:NP_997652Link to BLAST:NP_997652.4

Chromosomal Locations for CCDS 49736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101946168 101948089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101948171 101948205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101948421 101948641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101950387 101950512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101950858 101951022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101951742 101951837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101952229 101952289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101953229 101953443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101953859 101954224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3207 nt):
ATGTCTCTCTCTCCATGCCGGGCCCAGAGGGGCTTCAGCGCCCACTCAGCGTGTTCTGCCTTTTCAGGGG
CT
CGGGGCAGGACTGGCTTCAGCAGCAGGAGCCTTAGTTCCTCCAGGAGATGCAGAGGAAGCTCTTGTGG
G
AGGGCCTGGGGGGCAGAGACCAGGCAAGGGATACGGTTTGGGCAGGGTAAGGGAGGGCCTGGATTTTCC
CAG
TGCCCTCCAGGGGGCATCCAAGCAGTGACTGTCGACCAGAGTCTGCTGACCCCACTGAAGATCGAGG
TT
GACCCCCAGTTCCAGGTGGTGAAGACACAGGAGACTCGAGAGATCAGAAGCCTCAACAACCAATTCGC
C
TCCTTCATTGACAAGGTGCGCTTCCTGGAGCAACAGAACAAGGTACTGGAGACCAAGTGGGAGCTGCTG
CAG
CAGCTGCAGGGCAATCGCAGCCCTCAGGGTCTAGAGTGCATCTTCGAAACCTGCCTAGCCCGACTCA
GG
CAGCAGCTGGAGGAGCTGCAGAGAGAGCGAAGGGCTCTGGACTCTGAGCTGAAGACCTATCAGGACCA
G
GAGGATGAATATAAGTCCAAGTATGACCAGGAAGCGTACAAGCACGCCTCTGTGCAGAATGATTTTGTG
GTC
CTTAAGAAGGACGTGGATGAGGTTTTCCAGAGCAAGATGGATTTGGAAGGCAACCTGGAGTCTCTGA
AA
GAACACGTCTGCTTCTTGACACGTCTGTATGAAGAAGAACTGGGACAGCTGAAGACGCAGGCAGACGA
C
ATGTCTGTGGTGCTGTCCATGGATAACAATCGTTGCTTGGACTTCAGCGACATCATTGCTGAGGTCCGT
GCC
CGTTACGAGGAGATCACGCGGACTAGCAAGGCCGAGGCTGAGGCTGTGTTCCAGACCAAGTACCAGG
AA
CTCCAGGAATCAGCCCAGCTTCAAGGGAACAGCATGAAGGAAGCGCAGGTGCAGATTTCCCAGCTTCG
G
CAGGCCATACATAGGCTGCAGAGTCAGATTGGGAGCCTCAGGAAGCAGAATGACAGTCTGCAGTCGGCC
ATC
GCTGATGCTGAGCAGCAAGGGGAGATGGCTGTGAGGGATGCCCAGGCCAAGCTGGATGAGCTGGAGG
CT
GCCCTGAGAACAGCCAAGCAGGACATGGCACAGATGCTACGTGACTACCAGGAACTGATGGGCACGAA
G
TTGTCCCTGGATGTGGAGATCGCCATGTACCGGAGGTTGCTGGAGAGTGAGGAGTGCAGGATATCCACG
GAG
CACACCAGCCAGGTCACTGTGTCTATAACAGAGGGCAGCATTGTGCCTGGAAGAACTTGTGGAGGCC
AA
GTAGTTGTGCCTGGAAGAATTGGTACAGGCCAAGTGGTCATGCCTGGAAGGGAATGTGGAGGTCATGT
G
GTCATGCCTGGAAGAGGATCTGGAGGCCAGGTGACCATTCCTGGAAGAGGATCTGGAGGCCAGGTGACC
GTG
CCTAGAGGAGAATGTGGAGGCCAGGTGACCATGCCTGGGAGAGGATCTGGAGGCCAGGTGACCATGC
CT
GGGAGAGGATCTGGAGGCCAGGTGACCATTCCTGGAAGAGGATCTGGAGGCCAAGTGACTGTGCCTGG
G
AGAGGATCTGGAGGCCAAGTGACCATACCTGGGAGAGGATCTGGAGGCCAGGTGACCATTCCTGGAAGA
GGA
TCTGGAGGCCAAGTGACCGTGCCTGGGAGAGGATCTGGAGGCCAGGTGACCATTCCTGGGAGAGGAT
CT
GGAGGCCAGGTGACCATTCCTGGAAGAGAATCTGGAGGCCAGGTGACCATTCCTGGAAGAGAATCTGG
A
GGCCAGGTGACCATGCCTGGAAGAGAATATGGAGGCCAGGTGACCATTCCTGGAAGAGAATCTGGAGGC
CAG
GTGACCATGCCTGGAAGAGGATCTGGAGGCCAGGTGACCATGCCTGGGAGAGGATCTGGAGGCCAGG
TG
ACCGTGCCTGGAAGAGAATATGGAGGCCAGGTGACCGTGCCTGGGAGAGGATCTGGAGGCCAGGTGAC
C
GTGCCTGGGAGAGAATATGGAGGCCAGGTGACCGTGCCTAGAGGAGAATGTGGAGGCCAGGTGACAGTG
CCT
GGAAGAGAATATGGAGGCCAGGTGACCATGCCTAGAGGAGAATGTGGGGGTCAAGTGACCATGCCTG
GA
AGAGAATATGGAGGCCAGGTGACCATGCCTGGAAGAGAATCTGGAGGCCAGGTGACCGTGCCTGGAAG
A
GAATATGGAGGCCAGGTGACCATGCCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTGGAAGAGAA
TAT
GGAGGCCAGGTGACCATGCCTAGAGGAGAATGTGGGGGTCAAGTGACCATGCCTGGAAGAGAATATG
GA
GGCCAGGTGACCGTGCCTAGAAGAGAGTGTGGAGGCCAGGTGACCGTGCCTGGAAGAGAATATGGAGG
C
CAGGTGACCATGCCTGGAAGAGAATCTGGAGGCCAGGTGACCGTGCCTGGGAGAGAATATGGAGGCCAG
GTG
ACCGTGCCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTGGGAGAGAATATGGAGGCCAGGTGA
CC
GTGCCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTGGAAGAGAATATGGAGGCCAGGTGACCAT
G
CCTAGAGGAGAATGTGGAGGCCAGGTGACCGTGCCTAGAGGAGAATGTGGGGGTCAAGTGACCATGCCT
GGA
AGAGAATATGGAGGCCAGGTGACCGTGCCTGGAAGAGAATATGGAGGCCAGATGACCATGCCTGGAA
GA
GAATGTGGAGGCCAAGAGGTCATTCCTAGAGGAGAATGTGGGGGTCAAGTGGTCATGCCTGGACAAGA
A
TGTGGAGGCCAAGCAGTTATTCCGAGAGGAGACTGTGGAAGCCAAGTGGTCATTCCTAGAGAAGAATGT
GGG
GGTCAAGTGTCCATGCCCAGAGGAGAATGTGGAGGCCAAGTGGGCACTTGTGGCCACAGAGGCTGGC
AA
GGCAGCTTTGGGTCTGGAGGCTGCTCTAGCATCGTTACTGGTGGCTTCGAGATCCCCCAGGGATCTGG
A
TACAGCCCCACCATGGGTTCCTGTTCCGTATCTGGCTCAGGCTTCAGTTCTGGCTCTGGCTCCAGCTGC
CGC
ACCATCCTGAAGAAGACAGTGGAATCAAGTCGGAAGATGTCTGTCATTTATTGA


Translation (1068 aa):
MSLSPCRAQRGFSAHSACSAFSGARGRTGFSSRSLSSSRRCRGSSCGRAWGAETRQGIRFGQGKGGPGFS
Q
CPPGGIQAVTVDQSLLTPLKIEVDPQFQVVKTQETREIRSLNNQFASFIDK
VRFLEQQNKVLETKWELL
Q
QLQGNRSPQGLECIFETCLARLRQQLEELQRERRALDSELKTYQDQEDEYKS
KYDQEAYKHASVQNDFV
V
LKK
DVDEVFQSKMDLEGNLESLKEHVCFLTRLYEEELGQLKTQADDMSVVLSMDNNRCLDFSDIIAEVR
A
RYEEITRTSKAEAEAVFQTK
YQELQESAQLQGNSMKEAQVQISQLRQAIHRLQSQIGSLRKQNDSLQSA
I
ADAEQQGEMAVRDAQAKLDELEAALRTAKQDMAQMLRDYQELMGTKLSLDVEIAMYRRLLESEEC
RIST
E
HTSQVTV
SITEGSIVPGRTCGGQVVVPGRIGTGQVVMPGRECGGHVVMPGRGSGGQVTIPGRGSGGQVT
V
PRGECGGQVTMPGRGSGGQVTMPGRGSGGQVTIPGRGSGGQVTVPGRGSGGQVTIPGRGSGGQVTIPGR
G
SGGQVTVPGRGSGGQVTIPGRGSGGQVTIPGRESGGQVTIPGRESGGQVTMPGREYGGQVTIPGRESGG
Q
VTMPGRGSGGQVTMPGRGSGGQVTVPGREYGGQVTVPGRGSGGQVTVPGREYGGQVTVPRGECGGQVTV
P
GREYGGQVTMPRGECGGQVTMPGREYGGQVTMPGRESGGQVTVPGREYGGQVTMPRGECGGQVTVPGRE
Y
GGQVTMPRGECGGQVTMPGREYGGQVTVPRRECGGQVTVPGREYGGQVTMPGRESGGQVTVPGREYGGQ
V
TVPRGECGGQVTVPGREYGGQVTVPRGECGGQVTVPGREYGGQVTMPRGECGGQVTVPRGECGGQVTMP
G
REYGGQVTVPGREYGGQMTMPGRECGGQEVIPRGECGGQVVMPGQECGGQAVIPRGDCGSQVVIPREEC
G
GQVSMPRGECGGQVGTCGHRGWQGSFGSGGCSSIVTGGFEIPQGSGYSPTMGSCSVSGSGFSSGSGSSC
R
TILKKTVESSRKMSVIY




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser