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Report for CCDS80321.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
80321.1 |
Public |
Mus musculus |
5 |
Smr2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:20600](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:80321.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:20600](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 80321.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000196477.4 |
ENSMUSP00000142688.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000196477.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000142688.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000196477](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000142688](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000196070.1 |
ENSMUSP00000143443.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000196070.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000143443.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000196070](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000143443](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001252679.1 |
NP_001239608.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001252679.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001239608.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001252679](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001239608](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001239608.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001252680.1 |
NP_001239609.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001252680.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001239609.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001252680](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001239609](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001239609.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001252681.1 |
NP_001239610.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001252681.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001239610.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001252681](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001239610](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001239610.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 80321.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (432 nt): ATGAAGCCACTGTGTTTGGTCTTTGGCCTCTGTGTTCTTATAGGATGCTTCCTTTCTAGTGAGTGCCAAA GAGGCTTCAGAGGACAGCATGATCCTACAAGACCACTATCTCCTTCAAATCCTTCTTCTCATTTTTATCC TCAGCCTGATCCCAATCGTGTACAGATTTCTCAACCAGACAATATCCCCATTTTCATGTTTGAACAACCA CATTCTCTTAATATTTGTGTTCCTCCTCCTCCTTTATACCTTGGAGAAGAATTTGAAAAACTACCTCCTA ATACTCATATTCCTTATATACTAATACGTCCAGATATTGAACCTCCAAGCAAATATATTCAACCAGTTCC CAGAAAAAAATCAAATGCAACACCAGCTGCCAATAACTTTATAACTACTGCTACTGCCCCCAATTCTACT GATAGCTTTTGA
Translation (143 aa): MKPLCLVFGLCVLIGCFLSSECQRGFRGQHDPTRPLSPSNPSSHFYPQPDPNRVQISQPDNIPIFMFEQP HSLNICVPPPPLYLGEEFEKLPPNTHIPYILIRPDIEPPSKYIQPVPRKKSNATPAANNFITTATAPNST DSF
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