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Report for CCDS29132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29132.1 Public Mus musculus 18 Cdc23 23 108 98 CCDS HistoryNCBI Gene:52563Re-query CCDS DB by CCDS ID:29132.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29132.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133181.1 ENSMUSP00000122420.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133181.1Link to Ensembl Protein Viewer:ENSMUSP00000122420.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133181Re-query CCDS DB by Protein ID:ENSMUSP00000122420
Original member Current member NCBI NM_178347.4 NP_848124.1 Accepted alive Link to Nucleotide Sequence:NM_178347.4Link to Protein Sequence:NP_848124.1Re-query CCDS DB by Nucleotide ID:NM_178347Re-query CCDS DB by Protein ID:NP_848124Link to BLAST:NP_848124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848124.1 597 Q8BGZ4-1 597 99.8325% 0 1

Chromosomal Locations for CCDS 29132.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 34633994 34634164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34634393 34634512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34634588 34634666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34636286 34636347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34636703 34636778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34637059 34637178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34637320 34637473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34641096 34641177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34641295 34641392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34641473 34641650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34643799 34643931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34644025 34644130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34645066 34645108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34646902 34647039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34651390 34651462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34651547 34651707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGCTGCGAATTCTTCGGTAGTCTCGGTGGCAGCGGCCGCCACGGCGGTGCCGGGCGTATCCACTGTCG
CGGATTTTTCAGACTTGCAGGAAATTAAAAAGCAGCTGCTGCTCATCGCGGGCCTCACTCGGGAGCGGGG
CCTGCTGCATAGCAGCAAATGGTCTGCGGAGTTGGCCTTCTCTCTGCCCGCCTTGCCTTTGTCGGAGCTG
CAGCCGCCGCCGCCTCTGACAGAGGAGGACGCGCAGGATGTGGATGCTTACACCCTGGCCAAGGCCTACT
TTGATGTTAAAGAGTATGACCGGGCGGCACATTTCCTTCACGGCTGCAATAGCAAGAAAGCCTATTTCCT
GTACATGTATTCCAGATACCTGTCTGGAGAGAAGAAGAAGGATGACGAAACAGTTGATAGCCTAGGACCC
CTAGAGAAGGGACAAGTCAAAAACGAGGCTCTCAGAGAACTGAGAGTGGAACTCAGCCGGAAGCACCAGG
CTCGGGGACTTGATGGATTCGGCCTTTACCTGTATGGGGTGGTGCTTCGGAAACTGGACTTAGTGAAAGA
GGCCATTGATGTGTTTGTGGAGGCTACTCATGTTTTGCCTTTGCACTGGGGAGCCTGGTTAGAGCTGTGT
AACCTGATCACAGACAAAGAGATGCTGAAGTTCCTGTCTTTGCCTGACACCTGGATGAAAGAGTTCTTCT
TGGCTCACATATACACAGAACTGCAGCTGATAGAGGAGGCCCTGCAGAAGTATCAGCATCTCATTGATGT
GGGCTTTTCCAAGAGCTCGTACATTGTTTCCCAAATTGCAGTTGCCTATCACAATATCAGAGATATCGAC
AAAGCCCTTTCTATTTTCAATGAGCTGAGGAAACAAGATCCTTACAGGATTGAAAATATGGACACATTCT
CCAACCTTCTCTATGTCAGGAGCATGAAGTCTGAATTGAGTTACCTGGCGCATAACCTCTGTGAAATTGA
TAAATACCGAGTAGAAACATGCTGTGTAATTGGCAATTATTACAGCTTACGCTCCCAGCATGAGAAAGCA
GCTTTGTATTTCCAGAGAGCCCTAAAGTTGAATCCTAGGTACCTTGGGGCCTGGACACTGATGGGGCACG
AGTACATGGAGATGAAGAACACGTCTGCAGCTATTCAGGCTTACCGACATGCCATTGAGGTCAACAAGAG
AGACTACAGAGCTTGGTATGGCCTTGGGCAGACTTACGAAATCCTTAAAATGCCATTTTATTGCCTTTAT
TATTATAGACGGGCCCACCAGCTTCGTCCCAATGATTCTCGCATGCTGGTTGCCTTAGGAGAATGTTATG
AGAAACTCAATCAACTAGTGGAAGCCAAAAAGTGTTATTGGAGAGCATATGCCGTGGGAGACGTGGAGAA
AATGGCTCTTGTGAAGCTGGCCAAGCTTCATGAACAGTTGACTGAGTCAGAGCAGGCTGCCCAGTGTTAC
ATCAAATACATCCAAGATATCTATTCCTGTGGGGAGACCGTGGAGCACTTGGAGGAGAGCACAGCCTTCC
GATACCTGGCCCAGTACTATTTTAAGTGCAAGCTGTGGGATGAAGCTTCAACTTGTGCCCAAAAATGTTG
TGCATTCAATGATACCCGGGAAGAAGGTAAGGCCTTGCTCCGCCAGATCCTACAGCTGAGGAACCAAGGG
GAGACACCCACCTCTGACACGCCGGGTACCTTTTTCCTCCCTGCCTCACTGTCTGCAAACAACACTCCTA
CACGCAGAGTTTCTCCACTCAACCTGTCTTCAGTCACACCATAG

Translation (597 aa):
MAANSSVVSVAAAATAVPGVSTVADFSDLQEIKKQLLLIAGLTRERGLLHSSKWSAELAFSLPALPLSEL
QPPPPLTEEDAQDVDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGP
LEKGQVKNEALRELRVELSRKHQARGLDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPLHWGAWLELC
NLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQHLIDVGFSKSSYIVSQIAVAYHNIRDID
KALSIFNELRKQDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKA
ALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY
YYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCY
IKYIQDIYSCGETVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFNDTREEGKALLRQILQLRNQG
ETPTSDTPGTFFLPASLSANNTPTRRVSPLNLSSVTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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