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Report for CCDS22728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22728.1 Public Mus musculus 8 Jph3 23 108 98 CCDS HistoryNCBI Gene:57340Re-query CCDS DB by CCDS ID:22728.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026357.11 ENSMUSP00000026357.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026357.11Link to Ensembl Protein Viewer:ENSMUSP00000026357.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026357Re-query CCDS DB by Protein ID:ENSMUSP00000026357
Original member Current member EBI ENSMUST00000167439.1 ENSMUSP00000126190.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167439.1Link to Ensembl Protein Viewer:ENSMUSP00000126190.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167439Re-query CCDS DB by Protein ID:ENSMUSP00000126190
Original member Current member NCBI NM_020605.3 NP_065630.1 Accepted alive Link to Nucleotide Sequence:NM_020605.3Link to Protein Sequence:NP_065630.1Re-query CCDS DB by Nucleotide ID:NM_020605Re-query CCDS DB by Protein ID:NP_065630Link to BLAST:NP_065630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065630.1 744 Q9ET77 744 100% 0 0

Chromosomal Locations for CCDS 22728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121730623 121731004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121752967 121753744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121782161 121782285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121784560 121785428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121789399 121789479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGTCCAGTGGGGGTAGGTTTAATTTTGACGATGGAGGGTCCTACTGCGGAGGCTGGGAGGACGGCAAGG
CGCACGGCCATGGCGTCTGCACCGGCCCGAAGGGCCAGGGCGAATACACCGGCTCGTGGAGCCACGGCTT
TGAGGTGCTGGGCGTCTACACCTGGCCAAGCGGCAACACGTACCAAGGCACCTGGGCGCAGGGCAAGCGC
CACGGCATCGGCCTGGAGAGCAAGGGGAAGTGGGTGTACAAGGGCGAGTGGACGCACGGATTTAAGGGGC
GCTACGGGGTGCGGGAGTGCACGGGCAACGGAGCCAAATACGAAGGGACCTGGAGCAACGGACTGCAGGA
TGGCTACGGCACGGAGACCTACTCGGATGGAGGAACGTATCAGGGCCAATGGGTTGGTGGCATGCGCCAG
GGCTACGGTGTGCGGCAGAGTGTCCCTTATGGCATGGCCGCAGTCATCCGTTCGCCCCTGAGGACCTCCA
TCAACTCCCTGCGCAGCGAGCACACCAACGGGGCGGCACTGCACCCGGACGCCTCCCCGGCAGTGGCCGG
CAGTCCGGCCGTGTCCCGTGGTGGCTTCGTGCTGGTGGCCCACAGTGACTCGGAGATCCTCAAGAGCAAG
AAGAAGGGACTGTTCCGGCGCTCGCTGCTGAGCGGCCTGAAGCTACGCAAGTCTGAGTCCAAGAGCAGCC
TGGCCAGCCAGCGCAGCAAGCAGAGCTCCTTCCGCAGCGAGGCCGGAATGAGCACCGTGAGCTCCACGGC
CAGCGACATCCACTCCACCATCAGCCTGGGCGAGGCCGAGGCTGAGCTGGCGGTCATTGAGGACGACATC
GACGCCACTACCACCGAGACCTACGTGGGTGAATGGAAGAACGACAAACGCTCGGGCTTCGGTGTGAGCC
AGCGCTCGGACGGGCTTAAGTATGAGGGCGAGTGGGTCAGCAACCGCCGGCATGGGTACGGGTGCATGAC
TTTCCCCGACGGCACCAAGGAGGAGGGGAAGTACAAGCAGAACGTGCTCGTGAGCGGCAAACGCAAGAAT
CTCATCCCGCTGCGTGCCAGCAAGATCCGGGAGAAGGTGGACCGGGCCGTGGAGGCAGCCGAGAGGGCGG
CCACCATCGCCAAGCAGAAAGCCGAGATCGCTGCGTCCAGGACCTCCCACTCACGGGCCAAGGCTGAGGC
AGCACTTACTGCGGCTCAGAAAGCCCAGGAGGAAGCGCGGATCGCCAGGATCACTGCCAAAGAGTTCTCT
CCCTCCTTCCAGCACAGGGAAAACGGGCTTGAGTACCAGAGGCCAAAGCACCAGATGTCCTGCGATGATA
TCGAGGTGCTCTCCACCGGGACACCCCTACAGCAGGAGAGCCCCGAGCTGTACCGAAAGGGCACCACCCC
TTCTGATCTGACCCCTGACGACAGTCCCCTGCAGAGCTTCCCCGCCAGCCCCACATCTACCCCTCCGCCA
GCTCCTGCCTCCAGGACCAAGATGGCCCACTTCTCCAGGCAGGTCTCCGTGGACGAGGAGCGAAGCGGGG
ACATCCAGATGCTCCTCGAGGGCCGCGGAGGGGACTATGCCCGCAACAGCTGGGGCGAGGAGAAGGCTGG
GGCCTCTAGGGGTATCCGCAGCGGTGCCCTACGCAGCGGCCAGCCCACTGAGGACTTCCGCACCCGGGGC
TCAGGCCACAAGCAGCCTGGGAACCCCAAGCCCCGGGAGCGGCGGACGGAGTCCCCCACCACGTTCTCAT
GGACTTCCCACCACCGGGCAGGCAATCCCTGTTCTGGGGGCCCCAAGCTGCTAGAGCCAGATGAGGAGCA
GCTGAGCAACTACAAGCTGGAGATGAAGCCCTTACTGAGGATGGATGCCTGTCCACAGGATACGCACCCA
CAGAGACGGCGTCATAGCCGGGGTGCTGGGGGGGACAGGGGCTTCGGGCTACAGAGACTGAGGTCCAAGT
CCCAAAACAAGGAGAACCTTAGGCCAGCCTCCTCTGCAGAACCCACGGTGCAGAAACTCGAGAGCCTGCG
GCTGGGGGACCGGCCCGAGCCCCGTCTGCTGCGTTGGGACCTGACCTTCTCCCCACCCCAGAAGTCCCTG
CCTGTTGCACTCGAGTCTGACGAGGAGACTGGAGATGAGCTCAAGTCCAGCACGGGCTCAGCTCCCATCT
TGGTCGTCATGGTGATCCTGCTCAACATTGGAGTCGCCATTTTGTTTATTAACTTTTTCATCTGA

Translation (744 aa):
MSSGGRFNFDDGGSYCGGWEDGKAHGHGVCTGPKGQGEYTGSWSHGFEVLGVYTWPSGNTYQGTWAQGKR
HGIGLESKGKWVYKGEWTHGFKGRYGVRECTGNGAKYEGTWSNGLQDGYGTETYSDGGTYQGQWVGGMRQ
GYGVRQSVPYGMAAVIRSPLRTSINSLRSEHTNGAALHPDASPAVAGSPAVSRGGFVLVAHSDSEILKSK
KKGLFRRSLLSGLKLRKSESKSSLASQRSKQSSFRSEAGMSTVSSTASDIHSTISLGEAEAELAVIEDDI
DATTTETYVGEWKNDKRSGFGVSQRSDGLKYEGEWVSNRRHGYGCMTFPDGTKEEGKYKQNVLVSGKRKN
LIPLRASKIREKVDRAVEAAERAATIAKQKAEIAASRTSHSRAKAEAALTAAQKAQEEARIARITAKEFS
PSFQHRENGLEYQRPKHQMSCDDIEVLSTGTPLQQESPELYRKGTTPSDLTPDDSPLQSFPASPTSTPPP
APASRTKMAHFSRQVSVDEERSGDIQMLLEGRGGDYARNSWGEEKAGASRGIRSGALRSGQPTEDFRTRG
SGHKQPGNPKPRERRTESPTTFSWTSHHRAGNPCSGGPKLLEPDEEQLSNYKLEMKPLLRMDACPQDTHP
QRRRHSRGAGGDRGFGLQRLRSKSQNKENLRPASSAEPTVQKLESLRLGDRPEPRLLRWDLTFSPPQKSL
PVALESDEETGDELKSSTGSAPILVVMVILLNIGVAILFINFFI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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