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Report for CCDS27940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27940.1 Public Mus musculus 16 Tmem186 23 108 98 CCDS HistoryNCBI Gene:66690Re-query CCDS DB by CCDS ID:27940.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27940.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052505.9 ENSMUSP00000053862.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052505.9Link to Ensembl Protein Viewer:ENSMUSP00000053862.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000052505Re-query CCDS DB by Protein ID:ENSMUSP00000053862
Original member Current member NCBI NM_025708.5 NP_079984.2 Accepted alive Link to Nucleotide Sequence:NM_025708.5Link to Protein Sequence:NP_079984.2Re-query CCDS DB by Nucleotide ID:NM_025708Re-query CCDS DB by Protein ID:NP_079984Link to BLAST:NP_079984.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079984.2 216 Q9CR76 216 100% 0 0

Chromosomal Locations for CCDS 27940.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 8635745 8636392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8637486 8637488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGCTTTCCTCCTTCGAGTCGTGCCAAGGTTGCAGGGGCCCACTGCATGGAGGAGGCCTCTACAGGGAC
TATGGTGCTGCTCTGGGCAGGGGGATTCCAAAAGGTGGGTGGGGAGCAGGTCTCCCCACTCACGGGAGAA
GTCACCAGGCACCGAGACCGAAACATTCCATACAATCTACCGGTTCCGAGCCATCCGAGCAATTGGGTTC
CTCTCGCGGCTGAAGTTGGCCCAGACAGCTGTGACTGTGGTGGCCCTGCCCCCGGGCTTCTATTGCTACT
CACAAGGCCTCATGACCCTCAGTTCACTGTGCCTTCTGGGTGGGGTCGCCAGCTTTGCCCTGGCCATGCT
CTGTTGGATGAGCCACTTCTTCCGGAGACTGGTGGGCATCCTGTATGTGAACGAGTCGGGCACCCTGCTC
CGAGTGGCCCACCTGACCTTCTGGGGCTGGCGGCAGGACACGTACTGTGCCGTGTCAGACATGATACCCC
TGTCAGAATCCCAGGAACGGGTTCAGGATGTGTTTGTACGCATCCAGCAGTACAGTGGCAAGCAGACCTT
CTACCTCACCTTACGCTATGGCCGAATCCTGGACAGGGAACGGTTCGCACAAGTGTTCGGAACTCTGGCC
ACACTGAAGAACAGCAAGTAG

Translation (216 aa):
MAFLLRVVPRLQGPTAWRRPLQGLWCCSGQGDSKRWVGSRSPHSREKSPGTETETFHTIYRFRAIRAIGF
LSRLKLAQTAVTVVALPPGFYCYSQGLMTLSSLCLLGGVASFALAMLCWMSHFFRRLVGILYVNESGTLL
RVAHLTFWGWRQDTYCAVSDMIPLSESQERVQDVFVRIQQYSGKQTFYLTLRYGRILDRERFAQVFGTLA
TLKNSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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