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Report for CCDS16985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16985.1 Public Mus musculus 2 Tgm2 23 108 98 CCDS HistoryNCBI Gene:21817Re-query CCDS DB by CCDS ID:16985.1Re-query CCDS DB by GeneID:21817See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103122.9 ENSMUSP00000099411.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103122.9Link to Ensembl Protein Viewer:ENSMUSP00000099411.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103122Re-query CCDS DB by Protein ID:ENSMUSP00000099411
Original member Current member NCBI NM_009373.3 NP_033399.1 Accepted alive Link to Nucleotide Sequence:NM_009373.3Link to Protein Sequence:NP_033399.1Re-query CCDS DB by Nucleotide ID:NM_009373Re-query CCDS DB by Protein ID:NP_033399Link to BLAST:NP_033399.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033399.1 686 P21981 686 100% 0 0

Chromosomal Locations for CCDS 16985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158117801 158117951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158118847 158118983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158120125 158120285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158124121 158124390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158127112 158127354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158128639 158128742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158129323 158129458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158131331 158131508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158132429 158132557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158134251 158134369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158138707 158138949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158142995 158143174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158146291 158146300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGCAGAGGAGCTGCTCCTGGAGAGGTGTGATTTGGAGATTCAGGCCAATGGCCGTGACCACCACACGG
CCGACCTATGCCAAGAGAAACTGGTGCTGCGTCGTGGTCAGCGCTTCCGGCTGACTCTGTACTTCGAGGG
CCGTGGCTACGAGGCCAGCGTGGACAGCCTCACGTTCGGTGCTGTGACCGGCCCAGATCCCAGTGAAGAG
GCAGGGACCAAGGCCCGCTTCTCACTGTCTGACAATGTGGAGGAGGGATCTTGGTCAGCCTCAGTGCTGG
ACCAACAGGACAATGTCCTCTCGCTACAGCTCTGCACCCCAGCCAATGCTCCTATTGGCCTGTACCGTCT
CAGCCTAGAGGCTTCTACTGGCTACCAGGGCTCCAGCTTTGTGCTGGGCCACTTCATCCTGCTCTACAAT
GCCTGGTGCCCAGCCGATGATGTGTACCTAGACTCAGAGGAGGAGCGACGGGAATATGTCCTTACGCAAC
AGGGCTTCATCTACCAAGGCTCTGTCAAGTTCATCAAGAGTGTGCCTTGGAACTTTGGGCAGTTCGAGGA
TGGAATCCTGGATACCTGCCTGATGCTCTTGGATATGAACCCCAAGTTCCTGAAGAACCGTAGTCGGGAC
TGCTCACGCCGCAGCAGTCCCATCTATGTGGGCCGCGTGGTGAGCGCCATGGTCAACTGCAATGATGACC
AGGGTGTGCTTCTGGGCCGCTGGGACAACAACTATGGGGATGGTATCAGTCCCATGGCCTGGATTGGCAG
TGTGGACATTCTGCGGCGCTGGAAGGAACACGGCTGTCAGCAAGTGAAGTACGGGCAGTGCTGGGTGTTT
GCAGCGGTGGCCTGCACAGTGCTGCGGTGCCTCGGCATCCCTACCAGAGTGGTGACCAACTACAACTCCG
CCCACGACCAGAACAGCAACCTGCTCATCGAGTACTTCCGAAATGAGTTCGGGGAGCTGGAGAGCAACAA
GAGCGAGATGATCTGGAACTTCCACTGCTGGGTGGAGTCCTGGATGACCAGGCCAGACCTACAGCCGGGC
TATGAGGGGTGGCAGGCCATTGACCCCACACCACAGGAGAAGAGCGAAGGGACATACTGTTGTGGCCCAG
TCTCAGTGCGAGCCATCAAGGAGGGAGACCTGAGTACCAAGTATGATGCACCCTTCGTGTTTGCCGAGGT
CAACGCTGATGTGGTGGACTGGATCCGGCAGGAAGATGGGTCTGTGCTCAAATCCATCAACCGTTCCTTG
GTCGTGGGGCAGAAGATCAGCACTAAGAGTGTGGGCCGTGATGACCGGGAGGACATCACCCATACCTACA
AGTACCCAGAGGGGTCACCCGAGGAGAGGGAAGTCTTCACCAAGGCCAACCACCTGAACAAACTGGCAGA
GAAAGAGGAGACAGGGGTGGCCATGCGCATCCGAGTGGGGGACAGTATGAGCATGGGCAACGACTTCGAC
GTGTTTGCCCACATCGGCAACGACACCTCGGAGACTCGAGAGTGTCGTCTCCTGCTCTGTGCCCGCACTG
TCAGCTACAACGGGGTGCTGGGGCCCGAGTGTGGCACTGAGGACATCAACCTGACCCTGGATCCCTACTC
TGAGAACAGCATCCCACTTCGAATCCTCTACGAGAAGTACAGCGGGTGCCTGACAGAGTCAAACCTCATC
AAGGTGCGGGGCCTTCTCATCGAACCAGCTGCCAACAGCTACCTGCTGGCTGAGAGAGATCTCTACCTGG
AGAATCCCGAAATCAAGATCCGGGTCCTGGGAGAACCCAAGCAAAACCGCAAACTGGTGGCTGAGGTGTC
CCTGAAGAACCCACTTTCCGATCCCCTGTATGACTGCATCTTCACTGTGGAGGGGGCTGGCCTGACCAAG
GAGCAGAAGTCTGTGGAAGTCTCAGACCCGGTGCCAGCGGGCGATTTGGTCAAGGCACGGGTCGACCTGT
TCCCGACTGATATTGGCCTCCACAAGCTGGTGGTGAACTTCCAGTGTGACAAGCTGAAGTCGGTGAAGGG
TTACCGGAATGTTATCATCGGCCCGGCCTAA

Translation (686 aa):
MAEELLLERCDLEIQANGRDHHTADLCQEKLVLRRGQRFRLTLYFEGRGYEASVDSLTFGAVTGPDPSEE
AGTKARFSLSDNVEEGSWSASVLDQQDNVLSLQLCTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLYN
AWCPADDVYLDSEEERREYVLTQQGFIYQGSVKFIKSVPWNFGQFEDGILDTCLMLLDMNPKFLKNRSRD
CSRRSSPIYVGRVVSAMVNCNDDQGVLLGRWDNNYGDGISPMAWIGSVDILRRWKEHGCQQVKYGQCWVF
AAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGELESNKSEMIWNFHCWVESWMTRPDLQPG
YEGWQAIDPTPQEKSEGTYCCGPVSVRAIKEGDLSTKYDAPFVFAEVNADVVDWIRQEDGSVLKSINRSL
VVGQKISTKSVGRDDREDITHTYKYPEGSPEEREVFTKANHLNKLAEKEETGVAMRIRVGDSMSMGNDFD
VFAHIGNDTSETRECRLLLCARTVSYNGVLGPECGTEDINLTLDPYSENSIPLRILYEKYSGCLTESNLI
KVRGLLIEPAANSYLLAERDLYLENPEIKIRVLGEPKQNRKLVAEVSLKNPLSDPLYDCIFTVEGAGLTK
EQKSVEVSDPVPAGDLVKARVDLFPTDIGLHKLVVNFQCDKLKSVKGYRNVIIGPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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