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Report for CCDS20244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20244.1 Public Mus musculus 6 Retsat 23 108 98 CCDS HistoryNCBI Gene:67442Re-query CCDS DB by CCDS ID:20244.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070597.12 ENSMUSP00000068568.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070597.12Link to Ensembl Protein Viewer:ENSMUSP00000068568.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070597Re-query CCDS DB by Protein ID:ENSMUSP00000068568
Original member Current member NCBI NM_026159.5 NP_080435.3 Accepted alive Link to Nucleotide Sequence:NM_026159.5Link to Protein Sequence:NP_080435.3Re-query CCDS DB by Nucleotide ID:NM_026159Re-query CCDS DB by Protein ID:NP_080435Link to BLAST:NP_080435.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080435.3 609 Q64FW2 609 100% 0 0

Chromosomal Locations for CCDS 20244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72598628 72598796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72600973 72601155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72601476 72601717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72602655 72602856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72603654 72603851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72604866 72604985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72605972 72606110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72606385 72606494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72606573 72606739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72606874 72607033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72607242 72607381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1830 nt):
ATGTGGATCACTGCTCTGCTGCTGGCCGTGCTGCTGCTGGTGATCCTCCACAGGGTCTACGTGGGCCTTT
ACGCTGCAAGTTCCCCGAACCCCTTCGCCGAGGATGTCAAGCGACCGCCTGAACCCCTGGTGACCGACAA
GGAGGCTAGGAAGAAAGTTCTCAAACAAGCTTTCTCAGTCAGCCGAGTACCAGAGAAGCTGGATGCAGTG
GTGATCGGCAGCGGCATTGGGGGACTGGCCTCAGCTGCGGTTCTAGCTAAAGCTGGCAAGAGAGTCCTTG
TGCTGGAACAACATACCAAGGCGGGCGGCTGTTGTCATACCTTTGGGGAAAATGGCCTTGAATTTGACAC
TGGAATTCATTATATTGGACGAATGCGGGAGGGCAACATTGGCCGTTTTATCTTGGACCAGATCACTGAA
GGGCAACTGGACTGGGCCCCCATGGCCTCCCCTTTTGACTTGATGATACTAGAAGGGCCCAATGGCCGAA
AGGAGTTCCCCATGTACAGTGGGAGGAAAGAATACATCCAGGGCCTTAAGAAGAAGTTCCCCAAGGAAGA
AGCTGTCATTGACAAGTACATGGAGTTGGTTAAGGTGGTGGCCCGTGGAGTCTCTCATGCAGTTCTACTC
AAGTTCCTCCCATTGCCCTTGACTCAGCTCCTCAGCAAGTTTGGGCTACTGACTCGTTTCTCTCCATTCT
GCCGAGCGTCTACGCAGAGCCTAGCTGAAGTCCTGCAGCAGCTTGGGGCTTCCCGTGAGCTCCAGGCTGT
TCTCAGCTACATCTTCCCCACTTACGGAGTAACTCCCAGCCACACCGCCTTTTCCTTGCATGCTCTGCTG
GTTGACCACTACATACAAGGGGCATATTACCCTCGAGGGGGTTCCAGTGAGATCGCCTTCCATACCATCC
CTTTGATTCAGCGGGCCGGGGGCGCTGTCCTCACCAGGGCCACTGTACAGAGTGTGCTGCTGGACTCAGC
TGGGAGAGCGTGTGGTGTCAGTGTGAAGAAGGGACAAGAGCTGGTGAACATCTACTGCCCAGTTGTCATC
TCCAATGCGGGAATGTTCAATACCTATCAGCACTTGTTGCCAGAGACTGTCCGCCATCTGCCAGATGTGA
AGAAGCAGCTGGCGATGGTAAGGCCTGGTCTGAGCATGCTCTCAATCTTCATCTGTCTGAAAGGCACCAA
GGAGGACCTGAAGCTTCAGTCCACCAACTACTATGTTTATTTTGACACAGACATGGACAAAGCGATGGAG
CGCTATGTCTCTATGCCCAAGGAAAAGGCTCCAGAACACATTCCCCTTCTCTTCATTGCCTTCCCATCAA
GCAAGGATCCAACCTGGGAGGAGCGATTCCCAGACCGATCCACAATGACTGCGCTGGTACCCATGGCCTT
TGAATGGTTCGAGGAGTGGCAGGAGGAGCCAAAGGGCAAGCGTGGTGTTGACTATGAGACCCTCAAAAAT
GCCTTCGTGGAAGCCTCTATGTCGGTGATCATGAAACTGTTCCCACAGCTGGAGGGCAAGGTGGAGAGTG
TGACTGGAGGGTCACCACTGACCAACCAGTACTATCTGGCTGCACCCCGAGGAGCTACCTATGGAGCTGA
CCATGACTTGGCTCGGCTGCATCCTCATGCAATGGCTTCCATAAGAGCCCAAACCCCCATCCCCAACCTC
TACCTGACAGGCCAAGATATCTTCACCTGTGGGCTGATGGGGGCCCTGCAGGGGGCCTTGCTGTGCAGCA
GTGCCATCCTGAAACGGAACTTGTACTCAGATCTGCAGGCTCTTGGCTCAAAGGTCAAGGCACAAAAGAA
GAAGATGTAG

Translation (609 aa):
MWITALLLAVLLLVILHRVYVGLYAASSPNPFAEDVKRPPEPLVTDKEARKKVLKQAFSVSRVPEKLDAV
VIGSGIGGLASAAVLAKAGKRVLVLEQHTKAGGCCHTFGENGLEFDTGIHYIGRMREGNIGRFILDQITE
GQLDWAPMASPFDLMILEGPNGRKEFPMYSGRKEYIQGLKKKFPKEEAVIDKYMELVKVVARGVSHAVLL
KFLPLPLTQLLSKFGLLTRFSPFCRASTQSLAEVLQQLGASRELQAVLSYIFPTYGVTPSHTAFSLHALL
VDHYIQGAYYPRGGSSEIAFHTIPLIQRAGGAVLTRATVQSVLLDSAGRACGVSVKKGQELVNIYCPVVI
SNAGMFNTYQHLLPETVRHLPDVKKQLAMVRPGLSMLSIFICLKGTKEDLKLQSTNYYVYFDTDMDKAME
RYVSMPKEKAPEHIPLLFIAFPSSKDPTWEERFPDRSTMTALVPMAFEWFEEWQEEPKGKRGVDYETLKN
AFVEASMSVIMKLFPQLEGKVESVTGGSPLTNQYYLAAPRGATYGADHDLARLHPHAMASIRAQTPIPNL
YLTGQDIFTCGLMGALQGALLCSSAILKRNLYSDLQALGSKVKAQKKKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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