NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29734.1 Public Mus musculus 19 Plgrkt 23 108 98 CCDS HistoryNCBI Gene:67759Re-query CCDS DB by CCDS ID:29734.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016639.11 ENSMUSP00000016639.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016639.11Link to Ensembl Protein Viewer:ENSMUSP00000016639.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000016639Re-query CCDS DB by Protein ID:ENSMUSP00000016639
Original member Current member EBI ENSMUST00000143467.7 ENSMUSP00000120466.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143467.7Link to Ensembl Protein Viewer:ENSMUSP00000120466.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143467Re-query CCDS DB by Protein ID:ENSMUSP00000120466
Original member Current member NCBI NM_026362.2 NP_080638.1 Accepted alive Link to Nucleotide Sequence:NM_026362.2Link to Protein Sequence:NP_080638.1Re-query CCDS DB by Nucleotide ID:NM_026362Re-query CCDS DB by Protein ID:NP_080638Link to BLAST:NP_080638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080638.1 147 Q9D3P8 147 100% 0 0

Chromosomal Locations for CCDS 29734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 29348884 29349005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29350360 29350469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29351044 29351174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 29358317 29358397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGGGTTTATATTCTCGAAATCTATGAACGAAAACATGAAAAACCAACAGGAGTTCATGGTTACGCATG
CTCGGCTTCAGCTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGAT
CGCCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTTTTTTGGCATTGCAACCATCTCTTTAGCAACT
GGAGCACTAAAGCGAAAGAAGCCAGCCTTTCTCGTTCCTATAGTCCCGCTAAGCTTCATCTTCACCTACC
AGTATGACCTGGGCTACGGAACTCTCCTACAGAGAATGAAAAGTGAAGCTGAGGACATATTGGAAACAGA
AAAGACGAAGCTGGAGCTGCCAAAAGGACTGATCACCTTTGAAAGCCTTGAGAAAGCCAGAAGGGAGCAG
AGTAAACTCTTCTCAGACAAATGA

Translation (147 aa):
MGFIFSKSMNENMKNQQEFMVTHARLQLERHLTMQNEMRERQMAMQIAWSREFLKYFGTFFGIATISLAT
GALKRKKPAFLVPIVPLSFIFTYQYDLGYGTLLQRMKSEAEDILETEKTKLELPKGLITFESLEKARREQ
SKLFSDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH